Variant report

Variant	rs73085919
Chromosome Location	chr1:209398595-209398596
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:209396401..209399165-chr1:209603875..209605490,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000230937	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10494919	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1507332	0.81[EUR][1000 genomes]
rs1507333	0.88[EUR][1000 genomes]
rs1553623	0.81[EUR][1000 genomes]
rs17188002	1.00[ASN][1000 genomes]
rs17188016	1.00[ASN][1000 genomes]
rs17188030	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17260224	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17260245	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1933613	1.00[ASN][1000 genomes]
rs2055700	0.88[EUR][1000 genomes]
rs2788153	0.82[EUR][1000 genomes]
rs2800930	0.88[EUR][1000 genomes]
rs4504891	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56805778	1.00[ASN][1000 genomes]
rs57720299	1.00[ASN][1000 genomes]
rs59563227	1.00[ASN][1000 genomes]
rs59658508	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6657861	1.00[ASN][1000 genomes]
rs6661882	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6671102	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6673758	0.80[EUR][1000 genomes]
rs6681844	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6687960	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73083997	1.00[ASN][1000 genomes]
rs73085905	1.00[ASN][1000 genomes]
rs73085915	1.00[ASN][1000 genomes]
rs73085916	0.82[AFR][1000 genomes]
rs73085921	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73085926	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73085932	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73085944	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73085950	0.86[EUR][1000 genomes]
rs74155423	0.87[AFR][1000 genomes]
rs74155426	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7533402	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs906352	0.85[EUR][1000 genomes]
rs949488	0.88[EUR][1000 genomes]
rs976940	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832481	chr1:209371276-209540333	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209396400-209399800	Weak transcription	Fetal Brain Male	brain
2	chr1:209396600-209398600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr1:209397600-209398600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:209397600-209398600	Enhancers	NHEK	skin
5	chr1:209398000-209400800	Weak transcription	Fetal Lung	lung

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