Variant report

Variant	rs17440127
Chromosome Location	chr5:167495543-167495544
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10036661	1.00[CHB][hapmap]
rs10040185	1.00[CHB][hapmap]
rs10043193	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10043220	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10055910	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10067987	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1006807	1.00[CHB][hapmap]
rs10079060	1.00[ASN][1000 genomes]
rs1432822	1.00[CHB][hapmap]
rs248000	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs248001	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2617974	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs35102735	1.00[EUR][1000 genomes]
rs56780921	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57002229	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62383404	1.00[ASN][1000 genomes]
rs62383405	1.00[ASN][1000 genomes]
rs68186230	1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17440127	FBLL1	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167468000-167500800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:167483200-167502400	Weak transcription	Fetal Heart	heart
3	chr5:167488400-167496800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:167491800-167500600	Weak transcription	HSMM	muscle
5	chr5:167491800-167509200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:167492000-167500600	Weak transcription	NH-A	brain
7	chr5:167492800-167497400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:167494200-167498000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:167495000-167499800	Weak transcription	Left Ventricle	heart
10	chr5:167495400-167498600	Weak transcription	NHEK	skin
11	chr5:167495400-167499800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr5:167495400-167500800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:167495400-167500800	Weak transcription	Right Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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