Variant report

Variant	rs1432822
Chromosome Location	chr5:167566600-167566601
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10036661	1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs10040185	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10043193	0.83[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs10043220	0.83[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs10055910	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10067987	0.83[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs1006807	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10079060	0.87[EUR][1000 genomes]
rs17440127	1.00[CHB][hapmap]
rs2617974	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34454819	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62383404	0.90[EUR][1000 genomes]
rs62383405	0.90[EUR][1000 genomes]
rs62383426	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68186230	0.90[EUR][1000 genomes]
rs750851	0.90[EUR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167555800-167576000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:167556000-167580400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:167556200-167567000	Weak transcription	Right Ventricle	heart
4	chr5:167557200-167567000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:167560000-167566600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:167560000-167568400	Weak transcription	HSMMtube	muscle
7	chr5:167560000-167592200	Weak transcription	HSMM	muscle
8	chr5:167561800-167568400	Strong transcription	NHEK	skin
9	chr5:167563800-167580200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:167564200-167567400	Weak transcription	Right Atrium	heart
11	chr5:167564600-167567000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr5:167564600-167567000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr5:167564600-167567200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr5:167564600-167567200	Weak transcription	Stomach Mucosa	stomach
15	chr5:167564600-167567400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr5:167564800-167566800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr5:167564800-167567200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr5:167564800-167573200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr5:167565000-167567000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr5:167565000-167568000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr5:167565000-167580000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr5:167565600-167570200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr5:167566400-167567600	Enhancers	Left Ventricle	heart
24	chr5:167566600-167566800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr5:167566600-167567200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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