Variant report

Variant	rs2617974
Chromosome Location	chr5:167547671-167547672
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:167545828..167548111-chr5:167549692..167551736,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10036661	0.88[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10040185	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10043193	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs10043220	0.94[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs10055910	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];0.94[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10067987	0.93[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1006807	0.87[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10079060	0.86[EUR][1000 genomes]
rs1432822	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17440127	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs248001	1.00[CHB][hapmap]
rs34454819	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62383404	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62383405	0.90[EUR][1000 genomes]
rs62383426	1.00[ASN][1000 genomes]
rs68186230	0.90[EUR][1000 genomes]
rs750851	0.89[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2617974	FGF18	cis	cerebellum	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167526800-167552800	Weak transcription	Fetal Heart	heart
2	chr5:167532600-167552800	Weak transcription	Right Ventricle	heart
3	chr5:167533800-167559200	Weak transcription	NH-A	brain
4	chr5:167534200-167549600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:167537000-167550800	Weak transcription	HSMM	muscle
6	chr5:167541400-167550600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:167542800-167564800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:167544800-167564400	Weak transcription	Fetal Lung	lung
9	chr5:167545600-167550600	Weak transcription	Left Ventricle	heart
10	chr5:167545600-167551000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:167545600-167551800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr5:167545600-167551800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr5:167545600-167552800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr5:167546000-167549000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:167546000-167550400	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr5:167546200-167554200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr5:167546400-167550400	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr5:167546400-167554600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:167546400-167555000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr5:167546600-167550600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr5:167546600-167555000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr5:167547000-167550600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr5:167547000-167550800	Weak transcription	NHEK	skin

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