Variant report

Variant	rs1006807
Chromosome Location	chr5:167565600-167565601
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10036661	1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs10040185	0.87[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10043193	0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs10043220	0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs10055910	0.87[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10067987	0.80[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs10079060	0.88[EUR][1000 genomes]
rs1432822	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17440127	1.00[CHB][hapmap]
rs2617974	0.87[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34454819	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62383404	0.91[EUR][1000 genomes]
rs62383405	0.91[EUR][1000 genomes]
rs62383426	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68186230	0.91[EUR][1000 genomes]
rs750851	0.90[EUR][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167555800-167576000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:167556000-167580400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:167556200-167567000	Weak transcription	Right Ventricle	heart
4	chr5:167557200-167567000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:167560000-167566600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:167560000-167568400	Weak transcription	HSMMtube	muscle
7	chr5:167560000-167592200	Weak transcription	HSMM	muscle
8	chr5:167561800-167568400	Strong transcription	NHEK	skin
9	chr5:167563800-167580200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:167564200-167565800	Weak transcription	Left Ventricle	heart
11	chr5:167564200-167567400	Weak transcription	Right Atrium	heart
12	chr5:167564600-167567000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr5:167564600-167567000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr5:167564600-167567200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr5:167564600-167567200	Weak transcription	Stomach Mucosa	stomach
16	chr5:167564600-167567400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr5:167564800-167565600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr5:167564800-167566800	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr5:167564800-167567200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr5:167564800-167573200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr5:167565000-167565600	Weak transcription	Duodenum Mucosa	Duodenum
22	chr5:167565000-167567000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr5:167565000-167568000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr5:167565000-167580000	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr5:167565600-167565800	Enhancers	Duodenum Mucosa	Duodenum
26	chr5:167565600-167570200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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