Variant report

Variant	rs34454819
Chromosome Location	chr5:167543785-167543786
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10036661	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10040185	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10043193	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10043220	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10055910	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10067987	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1006807	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10079060	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1432822	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2617974	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62383404	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62383405	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62383426	1.00[ASN][1000 genomes]
rs68186230	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs750851	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167526800-167552800	Weak transcription	Fetal Heart	heart
2	chr5:167532000-167544800	Weak transcription	Gastric	stomach
3	chr5:167532600-167552800	Weak transcription	Right Ventricle	heart
4	chr5:167533800-167559200	Weak transcription	NH-A	brain
5	chr5:167534000-167545200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr5:167534200-167549600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:167537000-167544800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr5:167537000-167550800	Weak transcription	HSMM	muscle
9	chr5:167537800-167545200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr5:167538400-167544800	Weak transcription	Left Ventricle	heart
11	chr5:167538800-167544600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:167538800-167544800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:167540000-167544800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr5:167541400-167550600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:167542600-167544000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr5:167542600-167547000	Strong transcription	NHEK	skin
17	chr5:167542800-167545000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:167542800-167564800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr5:167543000-167543800	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr5:167543000-167543800	Weak transcription	Lung	lung
21	chr5:167543200-167544200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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