Variant report

Variant	rs10079060
Chromosome Location	chr5:167540276-167540277
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10036661	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10040185	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10043193	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10043220	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10055910	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10067987	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1006807	0.88[EUR][1000 genomes]
rs1432822	0.87[EUR][1000 genomes]
rs17440127	1.00[ASN][1000 genomes]
rs248000	1.00[ASN][1000 genomes]
rs248001	1.00[ASN][1000 genomes]
rs2617974	0.86[EUR][1000 genomes]
rs34454819	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56780921	1.00[ASN][1000 genomes]
rs57002229	1.00[ASN][1000 genomes]
rs62383404	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62383405	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68186230	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs750851	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167526800-167552800	Weak transcription	Fetal Heart	heart
2	chr5:167532000-167544800	Weak transcription	Gastric	stomach
3	chr5:167532600-167542600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:167532600-167552800	Weak transcription	Right Ventricle	heart
5	chr5:167533800-167559200	Weak transcription	NH-A	brain
6	chr5:167534000-167545200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr5:167534200-167549600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:167537000-167544800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:167537000-167550800	Weak transcription	HSMM	muscle
10	chr5:167537800-167541400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:167537800-167545200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr5:167538400-167541400	Weak transcription	NHEK	skin
13	chr5:167538400-167544800	Weak transcription	Left Ventricle	heart
14	chr5:167538800-167542800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:167538800-167544600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:167538800-167544800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr5:167539400-167542800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr5:167540000-167544800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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