Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:30091019..30094481-chr6:30095201..30099363,3	K562	blood:
2	chr6:30089484..30091081-chr6:30092185..30094762,2	K562	blood:
3	chr6:30079648..30081334-chr6:30091309..30093049,2	MCF-7	breast:
4	chr6:30090894..30093149-chr6:30095550..30098193,2	K562	blood:

Variant related genes	Relation type
ENSG00000204616	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs17455439	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17470302	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2245420	0.82[AFR][1000 genomes]
rs2517598	0.82[AFR][1000 genomes]
rs2523735	0.89[ASN][1000 genomes]
rs2523984	0.82[AFR][1000 genomes]
rs2523985	0.82[AFR][1000 genomes]
rs41272583	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41272595	0.83[EUR][1000 genomes]
rs41272599	0.83[EUR][1000 genomes]
rs55670497	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55906741	1.00[EUR][1000 genomes]
rs56716152	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56866777	1.00[EUR][1000 genomes]
rs57491859	1.00[EUR][1000 genomes]
rs57539476	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58092205	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58354469	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58848312	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59337080	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59354712	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59929537	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60311883	1.00[EUR][1000 genomes]
rs60650863	1.00[EUR][1000 genomes]
rs60960304	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60996698	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61456772	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884056	chr6:30089623-30097818	Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30086200-30092600	Enhancers	Fetal Intestine Small	intestine
2	chr6:30089000-30092600	Enhancers	Fetal Intestine Large	intestine
3	chr6:30089200-30092400	Enhancers	Hela-S3	cervix
4	chr6:30089400-30092400	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr6:30089400-30092600	Enhancers	Duodenum Mucosa	Duodenum
6	chr6:30091000-30092400	Enhancers	HepG2	liver
7	chr6:30092200-30092400	Bivalent Enhancer	Stomach Mucosa	stomach
8	chr6:30092200-30092600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:30092200-30092600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

Quick Search: