Variant report

Variant	rs60650863
Chromosome Location	chr6:30130456-30130457
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:122)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:30130420-30130470	AoSMC	blood vessel:	n/a
2	chr6:30130420-30130470	CMK	blood:	n/a
3	chr6:30130449-30130499	HAEpiC	amniotic membrane:	n/a
4	chr6:30130449-30130499	SK-N-MC	brain:	n/a
5	chr6:30130449-30130499	HPAEpiC	pulmonary alveolar:	n/a
6	chr6:30130420-30130470	AG04449	skin:	fetal
7	chr6:30130420-30130470	BE2_C	brain:	n/a
8	chr6:30130449-30130499	AG04450	lung:	fetal
9	chr6:30130449-30130499	RPTEC	kidney:	n/a
10	chr6:30130449-30130499	AG09319	gingival:	n/a
11	chr6:30130420-30130470	MCF10A-Er-Src	breast:	n/a
12	chr6:30130420-30130470	LNCaP	prostate:	n/a
13	chr6:30130420-30130470	PFSK-1	brain:	n/a
14	chr6:30130449-30130499	AG10803	skin:	n/a
15	chr6:30130449-30130499	NHDF-neo	bronchial:	n/a
16	chr6:30130420-30130470	AG04450	lung:	fetal
17	chr6:30130420-30130470	ovcar-3	ovarian:	n/a
18	chr6:30130420-30130470	NHBE	bronchial:	n/a
19	chr6:30130420-30130470	HCPEpiC	choroid plexus:	n/a
20	chr6:30130420-30130470	T-47D	breast:	n/a
21	chr6:30130420-30130470	U87	brain:	n/a
22	chr6:30130420-30130470	MCF-7	breast:	n/a
23	chr6:30130449-30130499	A549	lung:	n/a
24	chr6:30130449-30130499	SK-N-SH_RA	brain:	n/a
25	chr6:30130420-30130470	K562	blood:	n/a
26	chr6:30130420-30130470	H1-hESC	embryonic stem cell:	embryo
27	chr6:30130420-30130470	HCM	heart:	n/a
28	chr6:30130420-30130470	PANC-1	pancreas:	n/a
29	chr6:30130420-30130470	ECC-1	luminal epithelium:	n/a
30	chr6:30130449-30130499	PANC-1	pancreas:	n/a
31	chr6:30130420-30130470	HRE	kidney:	n/a
32	chr6:30130420-30130470	Jurkat	blood:	n/a
33	chr6:30130420-30130470	HAEpiC	amniotic membrane:	n/a
34	chr6:30130420-30130470	AG10803	skin:	n/a
35	chr6:30130420-30130470	HRCEpiC	kidney:	n/a
36	chr6:30130449-30130499	MCF10A-Er-Src	breast:	n/a
37	chr6:30130420-30130470	BJ	skin:	n/a
38	chr6:30130420-30130470	SK-N-SH_RA	brain:	n/a
39	chr6:30130449-30130499	HCM	heart:	n/a
40	chr6:30130449-30130499	H1-hESC	embryonic stem cell:	embryo
41	chr6:30130449-30130499	SKMC	muscle:	n/a
42	chr6:30130449-30130499	HCF	heart:	n/a
43	chr6:30130420-30130470	HCF	heart:	n/a
44	chr6:30130449-30130499	HEK293	kidney:	embryo
45	chr6:30130449-30130499	BE2_C	brain:	n/a
46	chr6:30130420-30130470	HNPCEpiC	eye:	n/a
47	chr6:30130449-30130499	PrEC	prostate:	n/a
48	chr6:30130449-30130499	CMK	blood:	n/a
49	chr6:30130420-30130470	HEK293	kidney:	embryo
50	chr6:30130420-30130470	HUVEC	blood vessel:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30127758..30130615-chr6:30135691..30137598,2	K562	blood:

No data

Variant related genes	Relation type
TRIM10	CpG island
TRIM15	CpG island
ENSG00000204610	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17455439	0.92[EUR][1000 genomes]
rs17455565	1.00[EUR][1000 genomes]
rs17470302	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41272583	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41272595	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41272599	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55670497	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55906741	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56716152	0.83[EUR][1000 genomes]
rs56866777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57491859	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57539476	0.83[EUR][1000 genomes]
rs58092205	0.92[EUR][1000 genomes]
rs58354469	0.92[EUR][1000 genomes]
rs58848312	0.92[EUR][1000 genomes]
rs59337080	0.92[EUR][1000 genomes]
rs59354712	0.83[EUR][1000 genomes]
rs59929537	0.83[EUR][1000 genomes]
rs60311883	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60960304	0.92[EUR][1000 genomes]
rs60996698	0.83[EUR][1000 genomes]
rs61456772	0.83[EUR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30124400-30130800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:30124800-30130800	Weak transcription	A549	lung
3	chr6:30124800-30132600	Weak transcription	Right Atrium	heart
4	chr6:30126000-30130800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:30126200-30130800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:30128800-30130800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:30129200-30130800	Weak transcription	K562	blood
8	chr6:30130200-30130600	Enhancers	Fetal Intestine Large	intestine
9	chr6:30130200-30130600	Enhancers	Fetal Intestine Small	intestine
10	chr6:30130200-30130600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
11	chr6:30130200-30130600	Flanking Active TSS	HepG2	liver
12	chr6:30130200-30131000	Enhancers	Stomach Mucosa	stomach
13	chr6:30130200-30131200	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr6:30130200-30131200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr6:30130200-30131400	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr6:30130200-30133000	Active TSS	Colonic Mucosa	Colon
17	chr6:30130400-30131200	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr6:30130400-30132800	Active TSS	Rectal Mucosa Donor 29	rectum

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