Variant report

Variant	rs58092205
Chromosome Location	chr6:30095663-30095664
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:30070791..30073416-chr6:30095644..30098529,2	K562	blood:
2	chr6:30091019..30094481-chr6:30095201..30099363,3	K562	blood:
3	chr6:30090894..30093149-chr6:30095550..30098193,2	K562	blood:

Variant related genes	Relation type
ENSG00000231226	Chromatin interaction
ENSG00000204616	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17455439	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17455565	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17470302	0.92[EUR][1000 genomes]
rs41272583	0.92[EUR][1000 genomes]
rs41272595	0.91[EUR][1000 genomes]
rs41272599	0.91[EUR][1000 genomes]
rs55670497	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55906741	0.92[EUR][1000 genomes]
rs56716152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56866777	0.92[EUR][1000 genomes]
rs57491859	0.92[EUR][1000 genomes]
rs57539476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58354469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58848312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59337080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59354712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59677434	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59929537	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60311883	0.92[EUR][1000 genomes]
rs60650863	0.92[EUR][1000 genomes]
rs60960304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60996698	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61456772	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884056	chr6:30089623-30097818	Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30092400-30096200	Weak transcription	Hela-S3	cervix
2	chr6:30092600-30097200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr6:30094400-30096000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr6:30094600-30096000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
5	chr6:30094600-30096200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
6	chr6:30094800-30096000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
7	chr6:30094800-30096200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
8	chr6:30094800-30096200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
9	chr6:30094800-30096200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
10	chr6:30094800-30096200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
11	chr6:30095000-30095800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr6:30095000-30095800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:30095000-30095800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
14	chr6:30095000-30095800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:30095000-30095800	Bivalent Enhancer	Fetal Lung	lung
16	chr6:30095000-30095800	Enhancers	Pancreas	Pancrea
17	chr6:30095000-30096000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:30095000-30096000	Bivalent Enhancer	Left Ventricle	heart
19	chr6:30095000-30096200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:30095200-30095800	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
21	chr6:30095200-30095800	Enhancers	Lung	lung
22	chr6:30095200-30095800	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
23	chr6:30095200-30095800	Bivalent/Poised TSS	Psoas Muscle	Psoas
24	chr6:30095200-30095800	Active TSS	Right Atrium	heart
25	chr6:30095200-30095800	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
26	chr6:30095200-30095800	Flanking Bivalent TSS/Enh	NHEK	skin
27	chr6:30095200-30096000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
28	chr6:30095200-30096000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr6:30095200-30096000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr6:30095200-30096000	Bivalent Enhancer	Adipose Nuclei	Adipose
31	chr6:30095200-30096000	Bivalent Enhancer	Fetal Brain Male	brain
32	chr6:30095200-30096000	Bivalent Enhancer	Fetal Heart	heart
33	chr6:30095200-30096000	Bivalent Enhancer	Placenta	Placenta
34	chr6:30095200-30096200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:30095200-30096200	Active TSS	Breast Myoepithelial Primary Cells	Breast
36	chr6:30095400-30095800	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
37	chr6:30095400-30095800	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
38	chr6:30095400-30095800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
39	chr6:30095400-30095800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr6:30095400-30095800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
41	chr6:30095400-30095800	Bivalent Enhancer	Ovary	ovary
42	chr6:30095400-30095800	Bivalent/Poised TSS	Right Ventricle	heart
43	chr6:30095400-30095800	Bivalent Enhancer	HMEC	breast
44	chr6:30095400-30096000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
45	chr6:30095400-30096000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr6:30095400-30096000	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
47	chr6:30095400-30096200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
48	chr6:30095400-30096200	Bivalent Enhancer	Fetal Muscle Leg	muscle
49	chr6:30095600-30095800	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr6:30095600-30095800	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived

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