Variant report

Variant	rs60311883
Chromosome Location	chr6:30124879-30124880
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:30120236..30122567-chr6:30123683..30125574,2	MCF-7	breast:
2	chr6:30083851..30086480-chr6:30123012..30125789,2	MCF-7	breast:
3	chr6:30034609..30036476-chr6:30124190..30127088,3	K562	blood:

Variant related genes	Relation type
ENSG00000204619	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17455439	0.92[EUR][1000 genomes]
rs17455565	1.00[EUR][1000 genomes]
rs17470302	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2523735	0.88[AFR][1000 genomes]
rs41272583	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41272595	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41272599	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55670497	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55906741	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56716152	0.83[EUR][1000 genomes]
rs56866777	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57491859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57539476	0.83[EUR][1000 genomes]
rs58092205	0.92[EUR][1000 genomes]
rs58354469	0.92[EUR][1000 genomes]
rs58848312	0.92[EUR][1000 genomes]
rs59337080	0.92[EUR][1000 genomes]
rs59354712	0.83[EUR][1000 genomes]
rs59929537	0.83[EUR][1000 genomes]
rs60650863	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60960304	0.92[EUR][1000 genomes]
rs60996698	0.83[EUR][1000 genomes]
rs61456772	0.83[EUR][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30118600-30125000	Enhancers	Fetal Intestine Large	intestine
2	chr6:30121000-30128200	Weak transcription	Lung	lung
3	chr6:30121600-30125600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:30121800-30125000	Enhancers	HMEC	breast
5	chr6:30122000-30125000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:30122200-30125000	Enhancers	Liver	Liver
7	chr6:30122200-30125000	Enhancers	NHEK	skin
8	chr6:30122200-30128200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:30122400-30125800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:30123000-30125000	Enhancers	Duodenum Mucosa	Duodenum
11	chr6:30123000-30125000	Enhancers	Fetal Intestine Small	intestine
12	chr6:30123000-30126200	Enhancers	NHDF-Ad	bronchial
13	chr6:30123200-30125200	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr6:30123200-30126200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:30124000-30125000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
16	chr6:30124000-30125000	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr6:30124400-30125600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:30124400-30125600	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr6:30124400-30125600	Weak transcription	Osteobl	bone
20	chr6:30124400-30130800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:30124600-30125000	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr6:30124600-30125000	Enhancers	Left Ventricle	heart
23	chr6:30124800-30125000	Enhancers	Small Intestine	intestine
24	chr6:30124800-30125000	Enhancers	Hela-S3	cervix
25	chr6:30124800-30127000	Enhancers	GM12878-XiMat	blood
26	chr6:30124800-30127800	Weak transcription	HepG2	liver
27	chr6:30124800-30130200	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr6:30124800-30130200	Weak transcription	Stomach Mucosa	stomach
29	chr6:30124800-30130400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr6:30124800-30130800	Weak transcription	A549	lung
31	chr6:30124800-30132600	Weak transcription	Right Atrium	heart

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