Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:30091019..30094481-chr6:30095201..30099363,3	K562	blood:
2	chr6:30089484..30091081-chr6:30092185..30094762,2	K562	blood:
3	chr6:30092394..30094578-chr6:30120446..30121954,2	MCF-7	breast:
4	chr6:30080946..30082589-chr6:30093243..30095341,2	MCF-7	breast:
5	chr6:30093045..30094849-chr6:30097589..30099576,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRIM31-2	chr6:30093187-30095185	NONHSAT108603

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs17455439	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17455565	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17470302	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2523735	0.89[ASN][1000 genomes]
rs41272583	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41272595	0.81[EUR][1000 genomes]
rs41272599	0.81[EUR][1000 genomes]
rs55670497	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55906741	0.83[EUR][1000 genomes]
rs56716152	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56866777	0.83[EUR][1000 genomes]
rs57491859	0.83[EUR][1000 genomes]
rs57539476	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58092205	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58354469	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58848312	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59337080	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59354712	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59459292	0.87[AFR][1000 genomes]
rs59929537	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60311883	0.83[EUR][1000 genomes]
rs60650863	0.83[EUR][1000 genomes]
rs60960304	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61456772	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884056	chr6:30089623-30097818	Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30092400-30093600	Weak transcription	HepG2	liver
2	chr6:30092400-30096200	Weak transcription	Hela-S3	cervix
3	chr6:30092600-30097200	Weak transcription	Duodenum Mucosa	Duodenum

Quick Search: