Variant report

Variant	rs55906741
Chromosome Location	chr6:30128222-30128223
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:61)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA1	chr6:30127780-30129719	PBDE	blood:	n/a	chr6:30129141-30129148 chr6:30129130-30129147 chr6:30129139-30129148
2	SPI1	chr6:30128065-30128293	K562	blood:	n/a	chr6:30128190-30128203 chr6:30128190-30128203 chr6:30128191-30128200 chr6:30128189-30128202

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:30128219-30128269	BE2_C	brain:	n/a
2	chr6:30128219-30128269	Jurkat	blood:	n/a
3	chr6:30128219-30128269	H1-hESC	embryonic stem cell:	embryo
4	chr6:30128219-30128269	AG09319	gingival:	n/a
5	chr6:30128219-30128269	PANC-1	pancreas:	n/a
6	chr6:30128219-30128269	SAEC	small airway:	n/a
7	chr6:30128219-30128269	ovcar-3	ovarian:	n/a
8	chr6:30128219-30128269	HNPCEpiC	eye:	n/a
9	chr6:30128219-30128269	HEK293	kidney:	embryo
10	chr6:30128219-30128269	PFSK-1	brain:	n/a
11	chr6:30128219-30128269	GM19239	blood:	n/a
12	chr6:30128219-30128269	HCT-116	colon:	n/a
13	chr6:30128219-30128269	GM12892	blood:	n/a
14	chr6:30128219-30128269	A549	lung:	n/a
15	chr6:30128219-30128269	HCF	heart:	n/a
16	chr6:30128219-30128269	PrEC	prostate:	n/a
17	chr6:30128219-30128269	ECC-1	luminal epithelium:	n/a
18	chr6:30128219-30128269	ProgFib	skin:	n/a
19	chr6:30128219-30128269	HIPEpiC	eye:	n/a
20	chr6:30128219-30128269	HRE	kidney:	n/a
21	chr6:30128219-30128269	IMR90	lung:	fetal
22	chr6:30128219-30128269	AG04450	lung:	fetal
23	chr6:30128219-30128269	Hela-S3	cervix:	n/a
24	chr6:30128219-30128269	HUVEC	blood vessel:	n/a
25	chr6:30128219-30128269	BJ	skin:	n/a
26	chr6:30128219-30128269	HRCEpiC	kidney:	n/a
27	chr6:30128219-30128269	GM06990	blood:	n/a
28	chr6:30128219-30128269	HAEpiC	amniotic membrane:	n/a
29	chr6:30128219-30128269	HCM	heart:	n/a
30	chr6:30128219-30128269	AG09309	skin:	n/a
31	chr6:30128219-30128269	K562	blood:	n/a
32	chr6:30128219-30128269	NB4	blood:	n/a
33	chr6:30128219-30128269	RPTEC	kidney:	n/a
34	chr6:30128219-30128269	AG10803	skin:	n/a
35	chr6:30128219-30128269	HEEpiC	esophagus:	n/a
36	chr6:30128219-30128269	SK-N-SH_RA	brain:	n/a
37	chr6:30128219-30128269	AoSMC	blood vessel:	n/a
38	chr6:30128219-30128269	NT2-D1	testis:	n/a
39	chr6:30128219-30128269	Hepatocyte	liver:	n/a
40	chr6:30128219-30128269	HRPEpiC	eye:	n/a
41	chr6:30128219-30128269	HMEC	breast:	n/a
42	chr6:30128219-30128269	NHDF-neo	bronchial:	n/a
43	chr6:30128219-30128269	GM12878	blood:	n/a
44	chr6:30128219-30128269	HL-60	blood:	n/a
45	chr6:30128219-30128269	U87	brain:	n/a
46	chr6:30128219-30128269	SK-N-MC	brain:	n/a
47	chr6:30128219-30128269	HepG2	liver:	n/a
48	chr6:30128219-30128269	HCPEpiC	choroid plexus:	n/a
49	chr6:30128219-30128269	CMK	blood:	n/a
50	chr6:30128219-30128269	MCF10A-Er-Src	breast:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30127758..30130615-chr6:30135691..30137598,2	K562	blood:
2	chr6:30127588..30130090-chr6:30135576..30138983,3	K562	blood:

No data

Variant related genes	Relation type
TRIM15	TF binding region
TRIM15	CpG island
ENSG00000204610	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17455439	0.92[EUR][1000 genomes]
rs17455565	1.00[EUR][1000 genomes]
rs17470302	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2523735	0.81[AFR][1000 genomes]
rs41272583	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41272595	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41272599	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55670497	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56716152	0.83[EUR][1000 genomes]
rs56866777	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57491859	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57539476	0.83[EUR][1000 genomes]
rs58092205	0.92[EUR][1000 genomes]
rs58354469	0.92[EUR][1000 genomes]
rs58848312	0.92[EUR][1000 genomes]
rs59337080	0.92[EUR][1000 genomes]
rs59354712	0.83[EUR][1000 genomes]
rs59929537	0.83[EUR][1000 genomes]
rs60311883	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60650863	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60960304	0.92[EUR][1000 genomes]
rs60996698	0.83[EUR][1000 genomes]
rs61456772	0.83[EUR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30124400-30130800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:30124800-30130200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr6:30124800-30130200	Weak transcription	Stomach Mucosa	stomach
4	chr6:30124800-30130400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:30124800-30130800	Weak transcription	A549	lung
6	chr6:30124800-30132600	Weak transcription	Right Atrium	heart
7	chr6:30125000-30130200	Weak transcription	Fetal Intestine Large	intestine
8	chr6:30125000-30130200	Weak transcription	Fetal Intestine Small	intestine
9	chr6:30125200-30128400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr6:30126000-30130800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:30126200-30130800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr6:30127800-30130200	Enhancers	HepG2	liver
13	chr6:30128200-30128400	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr6:30128200-30128800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:30128200-30128800	Enhancers	Lung	lung

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