Variant report

Variant	rs17468636
Chromosome Location	chr18:25647600-25647601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10502507	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1078501	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10853680	0.81[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs10853681	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11083245	0.85[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11083246	0.86[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11083248	0.86[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1122356	0.82[CHB][hapmap]
rs11564297	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11564308	0.82[CEU][hapmap];0.94[CHB][hapmap];0.93[EUR][1000 genomes]
rs11564316	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11564329	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11564330	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes]
rs11564332	0.82[CEU][hapmap];0.94[CHB][hapmap];0.93[EUR][1000 genomes]
rs11564393	0.93[CHB][hapmap];0.85[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11564396	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11564397	0.86[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11564400	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11564405	0.86[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11564409	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11564412	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs11564413	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs11873053	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12958882	0.93[EUR][1000 genomes]
rs1373136	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1373138	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1443450	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes]
rs1443451	0.82[CEU][hapmap];0.94[CHB][hapmap];0.93[EUR][1000 genomes]
rs1443453	0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs17445875	0.93[EUR][1000 genomes]
rs17446001	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs17446316	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17462962	0.89[EUR][1000 genomes]
rs17463213	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17463233	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17463295	0.86[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17468531	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17468678	0.93[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap]
rs1808940	0.86[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1816825	0.82[CHB][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1838161	0.82[CEU][hapmap];0.94[CHB][hapmap];0.93[EUR][1000 genomes]
rs1867285	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1941180	0.82[CEU][hapmap];0.93[CHB][hapmap];0.94[EUR][1000 genomes]
rs1944292	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1944294	0.81[CEU][hapmap];0.93[CHB][hapmap];0.93[EUR][1000 genomes]
rs1972934	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2053599	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2156605	0.82[CEU][hapmap];0.94[CHB][hapmap];0.93[EUR][1000 genomes]
rs2218361	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs2310784	0.93[EUR][1000 genomes]
rs4144654	0.82[CEU][hapmap];0.94[CHB][hapmap];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4598992	0.81[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs4800837	0.87[EUR][1000 genomes]
rs4800838	1.00[CHB][hapmap];0.94[EUR][1000 genomes]
rs4800839	0.82[CEU][hapmap];0.94[CHB][hapmap];0.93[EUR][1000 genomes]
rs4800840	0.83[CHB][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4800841	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs490820	0.83[CHB][hapmap]
rs500643	0.82[CHB][hapmap]
rs539075	0.81[CHB][hapmap]
rs565509	0.83[CHB][hapmap]
rs576467	0.83[CHB][hapmap]
rs597591	0.82[CHB][hapmap]
rs614966	0.82[CHB][hapmap]
rs623234	0.82[CHB][hapmap]
rs647733	0.83[CHB][hapmap]
rs656642	0.83[CHB][hapmap]
rs665781	0.82[CHB][hapmap]
rs673008	0.82[CHB][hapmap]
rs694943	0.83[CHB][hapmap]
rs7230771	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72639459	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8091314	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8091763	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes]
rs8092004	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes]
rs874314	0.82[CEU][hapmap];0.93[CHB][hapmap];0.93[EUR][1000 genomes]
rs894679	0.86[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9635986	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9789154	0.83[CHB][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9789221	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25625800-25650400	Weak transcription	Right Atrium	heart
2	chr18:25643000-25655200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr18:25643800-25651200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr18:25643800-25653400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr18:25644000-25655200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr18:25645000-25649600	Weak transcription	Left Ventricle	heart
7	chr18:25645000-25651200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr18:25645000-25658200	Weak transcription	Fetal Brain Female	brain
9	chr18:25645200-25649600	Weak transcription	Right Ventricle	heart
10	chr18:25645800-25650400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr18:25646000-25648000	Weak transcription	HepG2	liver
12	chr18:25646000-25650400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr18:25646000-25651000	Weak transcription	Brain Hippocampus Middle	brain
14	chr18:25646000-25651200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr18:25646000-25651200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr18:25646200-25650000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr18:25646200-25650200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr18:25646200-25666400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr18:25646600-25650400	Weak transcription	Brain Germinal Matrix	brain
20	chr18:25646800-25648000	Weak transcription	Fetal Heart	heart
21	chr18:25646800-25650400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr18:25646800-25650800	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr18:25646800-25651200	Weak transcription	HUVEC	blood vessel
24	chr18:25646800-25653600	Weak transcription	HSMM	muscle
25	chr18:25646800-25654000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr18:25647000-25648000	Weak transcription	Liver	Liver
27	chr18:25647000-25648400	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr18:25647000-25650400	Weak transcription	A549	lung
29	chr18:25647000-25655200	Weak transcription	NH-A	brain
30	chr18:25647200-25647600	ZNF genes & repeats	Osteobl	bone
31	chr18:25647200-25648200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr18:25647200-25648400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr18:25647400-25647600	ZNF genes & repeats	Fetal Lung	lung
34	chr18:25647400-25647800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
35	chr18:25647400-25649200	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr18:25647400-25650400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr18:25647600-25648000	Weak transcription	Fetal Lung	lung
38	chr18:25647600-25655000	Weak transcription	Osteobl	bone

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