Variant report

Variant	rs17468678
Chromosome Location	chr18:25654669-25654670
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10502507	0.93[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap]
rs10853680	0.87[CEU][hapmap];0.93[CHB][hapmap]
rs10853681	0.93[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap]
rs11083245	0.92[CEU][hapmap]
rs11083246	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap]
rs11083248	1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap]
rs11564308	0.88[CEU][hapmap];0.87[CHB][hapmap]
rs11564329	0.93[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap]
rs11564330	0.88[CEU][hapmap];0.94[CHB][hapmap]
rs11564332	0.88[CEU][hapmap];0.87[CHB][hapmap]
rs11564393	0.86[CEU][hapmap];0.88[CHB][hapmap];0.80[JPT][hapmap]
rs11564396	0.81[CEU][hapmap]
rs11564397	1.00[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap]
rs11564400	0.82[CEU][hapmap]
rs11564405	1.00[CEU][hapmap]
rs11564412	0.93[CEU][hapmap];0.94[CHB][hapmap]
rs11564413	0.88[CEU][hapmap];0.94[CHB][hapmap]
rs1373138	0.82[CEU][hapmap]
rs1443450	0.88[CEU][hapmap];0.94[CHB][hapmap]
rs1443451	0.88[CEU][hapmap];0.87[CHB][hapmap]
rs1443453	0.87[CEU][hapmap];0.93[CHB][hapmap]
rs17446001	0.93[CEU][hapmap];0.94[CHB][hapmap]
rs17463213	0.93[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap]
rs17463233	0.93[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap]
rs17463295	1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap]
rs17468636	0.93[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap]
rs1808940	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap]
rs1816825	0.81[CEU][hapmap]
rs1838161	0.88[CEU][hapmap];0.87[CHB][hapmap]
rs1867285	0.93[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap]
rs1941180	0.88[CEU][hapmap];0.86[CHB][hapmap]
rs1944292	0.93[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap]
rs1944294	0.87[CEU][hapmap];0.87[CHB][hapmap]
rs1972934	0.81[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap]
rs2053599	0.93[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap]
rs2156605	0.88[CEU][hapmap];0.87[CHB][hapmap]
rs2218361	0.88[CEU][hapmap];0.94[CHB][hapmap]
rs4144654	0.88[CEU][hapmap];0.87[CHB][hapmap]
rs4598992	0.87[CEU][hapmap];0.93[CHB][hapmap]
rs4800837	0.81[CEU][hapmap]
rs4800838	0.81[CEU][hapmap];0.93[CHB][hapmap]
rs4800839	0.88[CEU][hapmap];0.87[CHB][hapmap]
rs4800841	1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap]
rs7237382	0.82[CEU][hapmap]
rs8091314	0.82[CEU][hapmap]
rs8091763	0.88[CEU][hapmap];0.94[CHB][hapmap]
rs8092004	0.88[CEU][hapmap];0.94[CHB][hapmap]
rs874314	0.88[CEU][hapmap];0.86[CHB][hapmap]
rs894679	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap]
rs9789221	0.93[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25643000-25655200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr18:25644000-25655200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr18:25645000-25658200	Weak transcription	Fetal Brain Female	brain
4	chr18:25646200-25666400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr18:25647000-25655200	Weak transcription	NH-A	brain
6	chr18:25647600-25655000	Weak transcription	Osteobl	bone
7	chr18:25649600-25661400	Enhancers	Fetal Heart	heart
8	chr18:25650600-25666800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr18:25651200-25661800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr18:25651400-25655200	Weak transcription	Brain Angular Gyrus	brain
11	chr18:25651400-25655200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr18:25651400-25655400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr18:25651600-25655200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr18:25651600-25665200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr18:25651800-25655800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr18:25652200-25655000	Weak transcription	Brain Anterior Caudate	brain
17	chr18:25652200-25655200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr18:25652400-25655000	Weak transcription	Brain Hippocampus Middle	brain
19	chr18:25652400-25655200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr18:25652400-25655200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr18:25652400-25655400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr18:25652400-25657000	Weak transcription	HUVEC	blood vessel
23	chr18:25652400-25659600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr18:25652400-25659600	Weak transcription	Right Atrium	heart
25	chr18:25652600-25659600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr18:25652600-25661800	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr18:25652600-25663800	Weak transcription	Right Ventricle	heart
28	chr18:25653200-25657200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr18:25653400-25656200	Enhancers	HepG2	liver
30	chr18:25653600-25655200	Enhancers	A549	lung
31	chr18:25653600-25655600	Enhancers	Left Ventricle	heart
32	chr18:25653800-25655200	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr18:25654000-25655200	Weak transcription	Brain Germinal Matrix	brain
34	chr18:25654000-25655200	Enhancers	HSMM	muscle
35	chr18:25654000-25656800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr18:25654000-25666000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr18:25654200-25655000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr18:25654200-25655000	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr18:25654200-25655200	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr18:25654200-25655200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr18:25654200-25655200	Weak transcription	HSMMtube	muscle
42	chr18:25654400-25655200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr18:25654400-25655200	Weak transcription	Brain Substantia Nigra	brain
44	chr18:25654400-25655400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr18:25654400-25656800	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr18:25654400-25660000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr18:25654600-25655000	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr18:25654600-25655000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr18:25654600-25656000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr18:25654600-25657800	Enhancers	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links