Variant report

Variant	rs10853681
Chromosome Location	chr18:25630651-25630652
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10502506	0.81[CEU][hapmap]
rs10502507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1078501	0.83[CEU][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.85[YRI][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10853680	0.82[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];0.87[TSI][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11083245	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11083246	0.87[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11083248	0.87[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1122356	0.82[CHB][hapmap]
rs11564297	0.83[CEU][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11564308	0.94[CEU][hapmap];0.93[CHB][hapmap];0.82[YRI][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11564316	0.83[CEU][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11564329	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11564330	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11564332	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.93[EUR][1000 genomes]
rs11564393	0.93[CHB][hapmap];0.84[JPT][hapmap];0.82[YRI][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11564396	1.00[MEX][hapmap];0.92[TSI][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11564397	1.00[ASW][hapmap];0.87[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11564400	0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11564405	0.87[CEU][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11564409	0.83[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11564412	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11564413	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11873053	0.83[CEU][hapmap];0.85[YRI][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12958882	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1373136	0.83[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1373138	0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1443450	0.94[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1443451	0.94[CEU][hapmap];0.93[CHB][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1443453	0.82[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.87[GIH][hapmap];0.88[TSI][hapmap];0.91[EUR][1000 genomes]
rs17445875	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17446001	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17446316	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17462962	0.89[EUR][1000 genomes]
rs17463213	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17463233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17463295	0.87[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17468531	0.83[CEU][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17468636	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17468678	0.93[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap]
rs1808940	0.86[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1816825	0.82[CHB][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1838161	0.94[CEU][hapmap];0.93[CHB][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1867285	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1941180	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.94[EUR][1000 genomes]
rs1944292	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1944294	0.94[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.88[TSI][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1972934	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2053599	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2156605	0.94[CEU][hapmap];0.93[CHB][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2218361	0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2310784	0.93[EUR][1000 genomes]
rs4144654	0.94[CEU][hapmap];0.93[CHB][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4598992	0.82[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];0.92[TSI][hapmap];0.93[EUR][1000 genomes]
rs4800837	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs4800838	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];0.88[TSI][hapmap];0.82[YRI][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4800839	0.94[CEU][hapmap];0.93[CHB][hapmap];0.82[YRI][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4800840	0.83[CEU][hapmap];0.82[CHB][hapmap];0.85[YRI][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4800841	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs490820	0.82[CHB][hapmap]
rs500643	0.82[CHB][hapmap]
rs565509	0.82[CHB][hapmap]
rs576467	0.82[CHB][hapmap]
rs584936	0.82[CHB][hapmap]
rs597591	0.82[CHB][hapmap]
rs614966	0.82[CHB][hapmap]
rs623234	0.82[CHB][hapmap]
rs647733	0.82[CHB][hapmap]
rs656642	0.82[CHB][hapmap]
rs665781	0.82[CHB][hapmap]
rs673008	0.82[CHB][hapmap]
rs694943	0.82[CHB][hapmap]
rs7230771	0.83[CEU][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7237382	0.85[YRI][hapmap]
rs72639459	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8087860	0.85[TSI][hapmap]
rs8091314	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8091763	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8092004	0.94[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs874314	0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs894679	1.00[ASW][hapmap];0.87[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9635986	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9789154	0.83[CEU][hapmap];0.82[CHB][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9789221	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833605	chr18:25467096-25643447	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25618400-25631600	Weak transcription	Fetal Brain Male	brain
2	chr18:25625800-25630800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr18:25625800-25643400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr18:25625800-25650400	Weak transcription	Right Atrium	heart
5	chr18:25626000-25643200	Weak transcription	HUVEC	blood vessel
6	chr18:25626200-25630800	Weak transcription	Osteobl	bone
7	chr18:25627600-25645600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr18:25629000-25630800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr18:25629000-25630800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr18:25629200-25630800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr18:25629200-25630800	Enhancers	Left Ventricle	heart
12	chr18:25629200-25632800	Weak transcription	Fetal Brain Female	brain
13	chr18:25629400-25643000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr18:25629600-25631800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr18:25629600-25632000	Weak transcription	A549	lung
16	chr18:25629800-25631000	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr18:25630000-25634000	Weak transcription	Brain Angular Gyrus	brain
18	chr18:25630000-25634200	Weak transcription	Brain Substantia Nigra	brain
19	chr18:25630000-25643200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr18:25630000-25643200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr18:25630200-25632000	Enhancers	Fetal Heart	heart
22	chr18:25630200-25642400	Weak transcription	HSMM	muscle
23	chr18:25630400-25631400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr18:25630400-25637600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr18:25630600-25630800	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr18:25630600-25630800	Enhancers	Brain Germinal Matrix	brain
27	chr18:25630600-25632400	Weak transcription	NH-A	brain

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