Variant report

Variant	rs4800839
Chromosome Location	chr18:25618184-25618185
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:25574421..25577323-chr18:25616645..25618924,2	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10502506	0.87[CEU][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes]
rs10502507	0.94[CEU][hapmap];0.94[CHB][hapmap];0.85[YRI][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1078501	0.81[EUR][1000 genomes]
rs10853680	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10853681	0.94[CEU][hapmap];0.93[CHB][hapmap];0.82[YRI][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11083245	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs11083246	0.82[CEU][hapmap];0.88[CHB][hapmap];0.85[YRI][hapmap];0.90[EUR][1000 genomes]
rs11083248	0.82[CEU][hapmap];0.81[CHB][hapmap];0.85[YRI][hapmap];0.91[EUR][1000 genomes]
rs11564297	0.80[EUR][1000 genomes]
rs11564308	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11564316	0.81[EUR][1000 genomes]
rs11564329	0.94[CEU][hapmap];0.87[CHB][hapmap];0.85[YRI][hapmap];0.92[EUR][1000 genomes]
rs11564330	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11564332	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11564393	0.88[CHB][hapmap];0.84[EUR][1000 genomes]
rs11564397	0.81[CEU][hapmap];0.80[CHB][hapmap];0.82[YRI][hapmap];0.90[EUR][1000 genomes]
rs11564405	0.82[CEU][hapmap];0.90[EUR][1000 genomes]
rs11564409	0.80[EUR][1000 genomes]
rs11564412	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11564413	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11873053	0.80[EUR][1000 genomes]
rs12958882	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1373136	0.80[EUR][1000 genomes]
rs1443450	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1443451	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1443453	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17445875	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17446001	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17462962	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17463213	0.94[CEU][hapmap];0.87[CHB][hapmap];0.85[YRI][hapmap];0.92[EUR][1000 genomes]
rs17463233	0.94[CEU][hapmap];0.94[CHB][hapmap];0.85[YRI][hapmap];0.93[EUR][1000 genomes]
rs17463295	0.82[CEU][hapmap];0.81[CHB][hapmap];0.85[YRI][hapmap];0.91[EUR][1000 genomes]
rs17468531	0.80[EUR][1000 genomes]
rs17468636	0.82[CEU][hapmap];0.94[CHB][hapmap];0.93[EUR][1000 genomes]
rs17468678	0.88[CEU][hapmap];0.87[CHB][hapmap]
rs1808940	0.81[CEU][hapmap];0.88[CHB][hapmap];0.85[YRI][hapmap];0.90[EUR][1000 genomes]
rs1838161	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1867285	0.94[CEU][hapmap];0.93[CHB][hapmap];0.82[YRI][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1941180	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1944292	0.94[CEU][hapmap];0.87[CHB][hapmap];0.92[EUR][1000 genomes]
rs1944294	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1972934	0.82[CEU][hapmap];0.93[CHB][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2053599	0.94[CEU][hapmap];0.94[CHB][hapmap];0.85[YRI][hapmap];0.92[EUR][1000 genomes]
rs2156605	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2218361	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2310784	0.85[YRI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4144654	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4598992	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4800837	0.94[CEU][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes]
rs4800838	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4800840	0.81[EUR][1000 genomes]
rs4800841	0.81[CEU][hapmap];0.93[CHB][hapmap];0.82[YRI][hapmap];0.88[EUR][1000 genomes]
rs490820	0.89[AMR][1000 genomes]
rs533602	0.81[AMR][1000 genomes]
rs568575	0.88[AMR][1000 genomes]
rs643555	0.82[CHB][hapmap]
rs656642	0.81[AMR][1000 genomes]
rs673008	0.88[AMR][1000 genomes]
rs72639459	0.88[EUR][1000 genomes]
rs8091763	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8092004	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs874314	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs894679	0.81[CEU][hapmap];0.87[CHB][hapmap];0.82[YRI][hapmap];0.90[EUR][1000 genomes]
rs9789154	0.81[EUR][1000 genomes]
rs9789221	0.94[CEU][hapmap];0.93[CHB][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833605	chr18:25467096-25643447	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25583800-25621400	Weak transcription	Right Ventricle	heart
2	chr18:25600000-25619000	Weak transcription	HSMM	muscle
3	chr18:25609800-25621600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr18:25612400-25619000	Weak transcription	Brain Germinal Matrix	brain
5	chr18:25612800-25618200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr18:25612800-25618200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr18:25612800-25619000	Weak transcription	A549	lung
8	chr18:25614200-25618200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr18:25615200-25618400	Enhancers	Fetal Heart	heart
10	chr18:25615200-25624600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr18:25616000-25618200	Enhancers	Fetal Brain Female	brain
12	chr18:25616400-25618400	Enhancers	Fetal Brain Male	brain
13	chr18:25616800-25625000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr18:25617000-25618600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr18:25617000-25619200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr18:25617000-25619400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr18:25617000-25620000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr18:25617000-25620400	Weak transcription	Osteobl	bone
19	chr18:25617000-25625000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr18:25617000-25628800	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr18:25617200-25619800	Weak transcription	Brain Hippocampus Middle	brain
22	chr18:25617200-25621200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr18:25617400-25619000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr18:25617400-25619800	Weak transcription	Brain Cingulate Gyrus	brain
25	chr18:25617400-25620200	Weak transcription	Brain Angular Gyrus	brain
26	chr18:25617400-25625000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr18:25617400-25625200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr18:25617600-25618200	Weak transcription	Left Ventricle	heart
29	chr18:25617600-25618400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr18:25617600-25619000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr18:25617600-25619000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr18:25617600-25619000	Weak transcription	Liver	Liver
33	chr18:25617600-25619000	Weak transcription	Brain Anterior Caudate	brain
34	chr18:25617600-25619800	Weak transcription	Brain Substantia Nigra	brain
35	chr18:25617800-25619000	Weak transcription	NH-A	brain
36	chr18:25617800-25619600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr18:25617800-25621400	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr18:25618000-25619000	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr18:25618000-25619600	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr18:25618000-25624200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr18:25618000-25624200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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