Variant report

Variant	rs4800837
Chromosome Location	chr18:25570529-25570530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10502506	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10502507	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs10853680	0.94[CEU][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10853681	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs11083245	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs11083246	0.84[EUR][1000 genomes]
rs11083248	0.83[EUR][1000 genomes]
rs11564308	0.94[CEU][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes]
rs11564329	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs11564330	0.94[CEU][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes]
rs11564332	0.94[CEU][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11564393	0.80[EUR][1000 genomes]
rs11564397	0.84[EUR][1000 genomes]
rs11564405	0.84[EUR][1000 genomes]
rs11564412	0.88[CEU][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes]
rs11564413	0.94[CEU][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes]
rs12958882	0.92[EUR][1000 genomes]
rs1443450	0.94[CEU][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1443451	0.94[CEU][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes]
rs1443453	0.94[CEU][hapmap];0.89[JPT][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17445875	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17446001	0.88[CEU][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes]
rs17462962	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17463213	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs17463233	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs17463295	0.83[EUR][1000 genomes]
rs17468636	0.87[EUR][1000 genomes]
rs17468678	0.81[CEU][hapmap]
rs17522680	0.91[YRI][hapmap]
rs17536111	0.82[YRI][hapmap]
rs1808940	0.84[EUR][1000 genomes]
rs1838161	0.94[CEU][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes]
rs1867285	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs1941180	0.94[CEU][hapmap];0.89[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1944292	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs1944294	0.94[CEU][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes]
rs1972934	0.87[EUR][1000 genomes]
rs2053599	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs2077362	0.82[YRI][hapmap]
rs2156605	0.94[CEU][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes]
rs2218361	0.94[CEU][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2310784	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4144654	0.94[CEU][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes]
rs4598992	0.94[CEU][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4800838	0.88[CEU][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes]
rs4800839	0.94[CEU][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes]
rs4800841	0.82[EUR][1000 genomes]
rs72639459	0.82[EUR][1000 genomes]
rs8091763	0.94[CEU][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8092004	0.94[CEU][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs874314	0.94[CEU][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs894679	0.84[EUR][1000 genomes]
rs9789221	0.87[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv2760473	chr18:25386088-25571466	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1066192	chr18:25454413-25606736	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv543669	chr18:25454413-25606736	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv833605	chr18:25467096-25643447	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25531200-25593600	Weak transcription	Fetal Kidney	kidney
2	chr18:25536400-25578200	Weak transcription	Fetal Brain Male	brain
3	chr18:25536800-25574200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr18:25540800-25576400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr18:25542800-25574400	Strong transcription	Cortex derived primary cultured neurospheres	brain
6	chr18:25544400-25572400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr18:25545600-25588600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr18:25548800-25574600	Strong transcription	NH-A	brain
9	chr18:25549400-25574000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr18:25549600-25572000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr18:25553000-25593600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr18:25554400-25571000	Strong transcription	Osteobl	bone
13	chr18:25555000-25571600	Weak transcription	HSMMtube	muscle
14	chr18:25555600-25574200	Weak transcription	Brain Anterior Caudate	brain
15	chr18:25556200-25574600	Weak transcription	Brain Angular Gyrus	brain
16	chr18:25556200-25586800	Weak transcription	Spleen	Spleen
17	chr18:25556200-25592800	Weak transcription	Aorta	Aorta
18	chr18:25556200-25595800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr18:25556400-25576400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr18:25556400-25584600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr18:25557200-25575000	Weak transcription	Gastric	stomach
22	chr18:25558000-25571200	Weak transcription	Fetal Intestine Large	intestine
23	chr18:25558800-25583600	Weak transcription	Right Ventricle	heart
24	chr18:25559400-25574400	Strong transcription	Liver	Liver
25	chr18:25561800-25574000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr18:25562800-25574000	Strong transcription	HSMM	muscle
27	chr18:25564800-25591400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr18:25565000-25571000	Weak transcription	Fetal Heart	heart
29	chr18:25565000-25592800	Weak transcription	A549	lung
30	chr18:25565200-25572400	Weak transcription	Brain Hippocampus Middle	brain
31	chr18:25565200-25580000	Weak transcription	Ovary	ovary
32	chr18:25565200-25591800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr18:25565400-25572400	Weak transcription	Brain Cingulate Gyrus	brain
34	chr18:25565600-25572600	Weak transcription	Brain Substantia Nigra	brain
35	chr18:25565600-25572600	Weak transcription	HUVEC	blood vessel
36	chr18:25566000-25572200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr18:25566200-25570800	Weak transcription	HepG2	liver
38	chr18:25566200-25571800	Weak transcription	Brain Germinal Matrix	brain
39	chr18:25566200-25572600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr18:25566400-25570800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr18:25566400-25571200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr18:25566400-25572000	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr18:25566400-25572400	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr18:25566400-25572400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr18:25566400-25584600	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr18:25566600-25578400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr18:25566800-25571000	Weak transcription	Fetal Intestine Small	intestine
48	chr18:25567000-25571800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr18:25567200-25572400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr18:25567600-25571000	Weak transcription	Fetal Brain Female	brain

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