Variant report

Variant	rs17463213
Chromosome Location	chr18:25646034-25646035
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10502506	0.81[CEU][hapmap]
rs10502507	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1078501	0.83[CEU][hapmap];0.82[CHB][hapmap];0.85[YRI][hapmap];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10853680	0.94[CEU][hapmap];0.93[CHB][hapmap];0.92[EUR][1000 genomes]
rs10853681	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11083245	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11083246	0.88[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11083248	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1148376	0.82[CHB][hapmap]
rs11564297	0.83[CEU][hapmap];0.82[CHB][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11564308	0.94[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.92[EUR][1000 genomes]
rs11564316	0.83[CEU][hapmap];0.82[CHB][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11564329	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11564330	0.94[CEU][hapmap];0.94[CHB][hapmap];0.85[YRI][hapmap];0.93[EUR][1000 genomes]
rs11564332	0.94[CEU][hapmap];0.87[CHB][hapmap];0.85[YRI][hapmap];0.92[EUR][1000 genomes]
rs11564393	0.88[CHB][hapmap];0.85[JPT][hapmap];0.85[YRI][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11564396	0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11564397	0.87[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11564400	0.87[YRI][hapmap];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11564405	0.88[CEU][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11564409	0.83[CEU][hapmap];0.83[CHB][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11564412	1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[YRI][hapmap];0.94[EUR][1000 genomes]
rs11564413	0.94[CEU][hapmap];0.94[CHB][hapmap];0.85[YRI][hapmap];0.92[EUR][1000 genomes]
rs11873053	0.83[CEU][hapmap];0.83[CHB][hapmap];0.87[YRI][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1234682	0.83[CHB][hapmap]
rs12958882	0.92[EUR][1000 genomes]
rs1373136	0.83[CEU][hapmap];0.83[CHB][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1373138	0.87[YRI][hapmap];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1443450	0.94[CEU][hapmap];0.94[CHB][hapmap];0.93[EUR][1000 genomes]
rs1443451	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs1443453	0.94[CEU][hapmap];0.93[CHB][hapmap];0.90[EUR][1000 genomes]
rs17445875	0.92[EUR][1000 genomes]
rs17446001	1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[YRI][hapmap];0.94[EUR][1000 genomes]
rs17446316	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17462962	0.88[EUR][1000 genomes]
rs17463233	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17463295	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17468531	0.83[CEU][hapmap];0.83[CHB][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17468636	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17468678	0.93[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap]
rs1808940	0.87[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1816825	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1838161	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs1867285	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1941180	0.94[CEU][hapmap];0.86[CHB][hapmap];0.83[YRI][hapmap];0.93[EUR][1000 genomes]
rs1944292	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1944294	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs1972934	0.88[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2053599	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2156605	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs2218361	0.94[CEU][hapmap];0.94[CHB][hapmap];0.94[EUR][1000 genomes]
rs2310784	0.92[EUR][1000 genomes]
rs4144654	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs4598992	0.94[CEU][hapmap];0.93[CHB][hapmap];0.92[EUR][1000 genomes]
rs4800837	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs4800838	0.88[CEU][hapmap];0.93[CHB][hapmap];0.82[YRI][hapmap];0.93[EUR][1000 genomes]
rs4800839	0.94[CEU][hapmap];0.87[CHB][hapmap];0.85[YRI][hapmap];0.92[EUR][1000 genomes]
rs4800840	0.83[CEU][hapmap];0.87[YRI][hapmap];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4800841	0.87[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs533602	0.83[CHB][hapmap]
rs539075	0.87[CHB][hapmap]
rs568575	0.83[CHB][hapmap]
rs587613	0.83[CHB][hapmap]
rs665651	0.83[CHB][hapmap]
rs7230771	0.83[CEU][hapmap];0.82[CHB][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7237382	0.87[YRI][hapmap]
rs72639459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8091314	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8091763	0.94[CEU][hapmap];0.94[CHB][hapmap];0.85[YRI][hapmap];0.93[EUR][1000 genomes]
rs8092004	0.94[CEU][hapmap];0.94[CHB][hapmap];0.93[EUR][1000 genomes]
rs874314	0.94[CEU][hapmap];0.86[CHB][hapmap];0.92[EUR][1000 genomes]
rs894679	0.87[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9635986	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9789154	0.83[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9789221	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25625800-25650400	Weak transcription	Right Atrium	heart
2	chr18:25642400-25646800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr18:25642400-25646800	Enhancers	HSMM	muscle
4	chr18:25642600-25646200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr18:25642600-25646800	Enhancers	Fetal Heart	heart
6	chr18:25642800-25646200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr18:25642800-25647400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr18:25643000-25655200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr18:25643200-25646600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr18:25643200-25646800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr18:25643200-25647400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr18:25643800-25646800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr18:25643800-25651200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr18:25643800-25653400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr18:25644000-25655200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr18:25644200-25646200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr18:25644200-25646600	Enhancers	Brain Germinal Matrix	brain
18	chr18:25644200-25647400	Weak transcription	Fetal Lung	lung
19	chr18:25644600-25646600	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr18:25644600-25646800	Enhancers	HUVEC	blood vessel
21	chr18:25644800-25646200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr18:25644800-25646200	Enhancers	Placenta Amnion	Placenta Amnion
23	chr18:25644800-25646600	Enhancers	Brain Anterior Caudate	brain
24	chr18:25644800-25646800	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr18:25645000-25647000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr18:25645000-25649600	Weak transcription	Left Ventricle	heart
27	chr18:25645000-25651200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr18:25645000-25658200	Weak transcription	Fetal Brain Female	brain
29	chr18:25645200-25646200	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr18:25645200-25649600	Weak transcription	Right Ventricle	heart
31	chr18:25645400-25646600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr18:25645400-25646800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr18:25645400-25646800	Enhancers	Osteobl	bone
34	chr18:25645400-25647000	Enhancers	NH-A	brain
35	chr18:25645600-25646800	Enhancers	HSMMtube	muscle
36	chr18:25645800-25646200	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr18:25645800-25646200	Flanking Active TSS	A549	lung
38	chr18:25645800-25650400	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr18:25646000-25646200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr18:25646000-25648000	Weak transcription	HepG2	liver
41	chr18:25646000-25650400	Weak transcription	Brain Cingulate Gyrus	brain
42	chr18:25646000-25651000	Weak transcription	Brain Hippocampus Middle	brain
43	chr18:25646000-25651200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr18:25646000-25651200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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