Variant report

Variant	rs17487051
Chromosome Location	chr4:149743283-149743284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:149742842..149744633-chr4:149747045..149749652,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10003214	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10019546	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10021639	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10031956	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10489051	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10489054	1.00[ASN][1000 genomes]
rs13112975	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13133607	1.00[ASN][1000 genomes]
rs13151384	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17025376	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17025396	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17584168	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17725791	1.00[ASN][1000 genomes]
rs17778070	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2157932	1.00[ASN][1000 genomes]
rs28394720	1.00[ASN][1000 genomes]
rs28407733	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28417942	1.00[ASN][1000 genomes]
rs28478129	1.00[ASN][1000 genomes]
rs28498848	1.00[ASN][1000 genomes]
rs28544066	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28557410	1.00[ASN][1000 genomes]
rs28636985	1.00[ASN][1000 genomes]
rs28787362	1.00[ASN][1000 genomes]
rs28860488	1.00[ASN][1000 genomes]
rs35983161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4518225	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66979066	1.00[ASN][1000 genomes]
rs67997931	1.00[ASN][1000 genomes]
rs6835584	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6836835	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6846370	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6854049	1.00[CHD][hapmap];0.85[TSI][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6854659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719869	1.00[ASN][1000 genomes]
rs756862	1.00[ASN][1000 genomes]
rs7665428	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7676142	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7676393	0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7688521	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9654219	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9654230	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9992331	1.00[ASN][1000 genomes]
rs9993762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9994141	1.00[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149740600-149743600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:149741400-149745000	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr4:149742600-149743800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:149743200-149743400	Enhancers	Stomach Mucosa	stomach

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