Variant report

Variant	rs17778070
Chromosome Location	chr4:149772371-149772372
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10003214	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10019546	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10021639	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10031956	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10489051	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10489054	1.00[ASN][1000 genomes]
rs13112975	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13133607	1.00[ASN][1000 genomes]
rs13151384	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17025376	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17025396	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17487051	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17584168	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17725791	1.00[ASN][1000 genomes]
rs2157932	1.00[ASN][1000 genomes]
rs28394720	1.00[ASN][1000 genomes]
rs28407733	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28417942	1.00[ASN][1000 genomes]
rs28478129	1.00[ASN][1000 genomes]
rs28491207	1.00[ASN][1000 genomes]
rs28498848	1.00[ASN][1000 genomes]
rs28544066	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28557410	1.00[ASN][1000 genomes]
rs28579751	1.00[ASN][1000 genomes]
rs28636985	1.00[ASN][1000 genomes]
rs28787362	1.00[ASN][1000 genomes]
rs28860488	1.00[ASN][1000 genomes]
rs35983161	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4518225	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66979066	1.00[ASN][1000 genomes]
rs67997931	1.00[ASN][1000 genomes]
rs6835584	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6836835	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6846370	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6854049	0.94[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6854659	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719869	1.00[ASN][1000 genomes]
rs756862	1.00[ASN][1000 genomes]
rs7665428	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7676142	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7676393	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7688521	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9654219	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9654230	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9992331	1.00[ASN][1000 genomes]
rs9993762	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9994141	1.00[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149759200-149775600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:149768400-149772600	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr4:149770400-149772400	Enhancers	Liver	Liver
4	chr4:149770800-149772600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:149770800-149774400	Enhancers	Duodenum Mucosa	Duodenum
6	chr4:149771000-149773000	Enhancers	Fetal Intestine Small	intestine
7	chr4:149771200-149772600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr4:149771200-149775000	Enhancers	Stomach Mucosa	stomach
9	chr4:149771400-149772400	Weak transcription	Placenta	Placenta
10	chr4:149771400-149773600	Weak transcription	Pancreas	Pancrea
11	chr4:149771400-149774000	Weak transcription	Small Intestine	intestine
12	chr4:149771600-149772600	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr4:149771600-149773600	Weak transcription	Psoas Muscle	Psoas
14	chr4:149771600-149773600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr4:149772200-149774200	Enhancers	HUVEC	blood vessel

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