Variant report

Variant	rs9654219
Chromosome Location	chr4:149762787-149762788
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:149761982..149763891-chr4:149764266..149767251,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10003214	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10019546	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10021639	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10031956	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10489051	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10489054	1.00[ASN][1000 genomes]
rs13112975	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13133607	1.00[ASN][1000 genomes]
rs13151384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17025376	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17025396	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17487051	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17584168	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17725791	1.00[ASN][1000 genomes]
rs17778070	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2157932	1.00[ASN][1000 genomes]
rs28394720	1.00[ASN][1000 genomes]
rs28407733	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28417942	1.00[ASN][1000 genomes]
rs28478129	1.00[ASN][1000 genomes]
rs28491207	1.00[ASN][1000 genomes]
rs28498848	1.00[ASN][1000 genomes]
rs28544066	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28557410	1.00[ASN][1000 genomes]
rs28636985	1.00[ASN][1000 genomes]
rs28787362	1.00[ASN][1000 genomes]
rs28860488	1.00[ASN][1000 genomes]
rs35983161	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4518225	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66979066	1.00[ASN][1000 genomes]
rs67997931	1.00[ASN][1000 genomes]
rs6835584	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6836835	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6846370	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6854049	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6854659	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719869	1.00[ASN][1000 genomes]
rs756862	1.00[ASN][1000 genomes]
rs7665428	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7676142	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7676393	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7688521	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9654230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9992331	1.00[ASN][1000 genomes]
rs9993762	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9994141	1.00[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149756600-149763800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr4:149756800-149763800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:149759200-149775600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:149761400-149763000	Enhancers	Placenta	Placenta
5	chr4:149762600-149764000	Enhancers	Colon Smooth Muscle	Colon

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