Variant report

Variant	rs756862
Chromosome Location	chr4:149903798-149903799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10003214	1.00[ASN][1000 genomes]
rs10019546	1.00[ASN][1000 genomes]
rs10021639	1.00[ASN][1000 genomes]
rs10031956	1.00[ASN][1000 genomes]
rs10489051	1.00[ASN][1000 genomes]
rs10489054	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13112975	1.00[ASN][1000 genomes]
rs13133607	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13151384	1.00[ASN][1000 genomes]
rs1438777	1.00[ASN][1000 genomes]
rs17025376	1.00[ASN][1000 genomes]
rs17025396	1.00[ASN][1000 genomes]
rs17487051	1.00[ASN][1000 genomes]
rs17584168	1.00[ASN][1000 genomes]
rs17725791	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17778070	1.00[ASN][1000 genomes]
rs2157932	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28394720	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28407733	1.00[ASN][1000 genomes]
rs28417942	1.00[ASN][1000 genomes]
rs28465275	0.86[AFR][1000 genomes]
rs28478129	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28491207	1.00[ASN][1000 genomes]
rs28498848	1.00[ASN][1000 genomes]
rs28544066	1.00[ASN][1000 genomes]
rs28557410	1.00[ASN][1000 genomes]
rs28579751	1.00[ASN][1000 genomes]
rs28636985	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28787362	1.00[ASN][1000 genomes]
rs28860488	1.00[ASN][1000 genomes]
rs35983161	1.00[ASN][1000 genomes]
rs4518225	1.00[ASN][1000 genomes]
rs66979066	1.00[ASN][1000 genomes]
rs67997931	1.00[ASN][1000 genomes]
rs6835584	1.00[ASN][1000 genomes]
rs6836835	1.00[ASN][1000 genomes]
rs6846370	1.00[ASN][1000 genomes]
rs6854049	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs6854659	1.00[ASN][1000 genomes]
rs72719869	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7665428	1.00[ASN][1000 genomes]
rs7676142	1.00[ASN][1000 genomes]
rs7676393	1.00[ASN][1000 genomes]
rs7688521	1.00[ASN][1000 genomes]
rs9654219	1.00[ASN][1000 genomes]
rs9654230	1.00[ASN][1000 genomes]
rs9992331	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9993762	1.00[ASN][1000 genomes]
rs9994141	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461677	chr4:149794284-149903982	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv595686	chr4:149794284-149903982	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv470083	chr4:149817052-149903982	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs756862	NIPA1	trans	cerebellum	SCAN
rs756862	TRIM2	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149902000-149905200	Enhancers	Primary B cells from peripheral blood	blood
2	chr4:149902800-149908400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr4:149903600-149903800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr4:149903600-149904600	Weak transcription	Primary B cells from cord blood	blood

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