Variant report

Variant	rs6854049
Chromosome Location	chr4:149866370-149866371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr4:149866299-149866393	A549	lung:	n/a	n/a
2	JUN	chr4:149866358-149866655	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:56988283..56990164-chr4:149864191..149866506,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000249317	TF binding region

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10003214	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10019546	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10021639	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10031956	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10489051	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10489054	1.00[ASN][1000 genomes]
rs13112975	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13133607	1.00[ASN][1000 genomes]
rs13151384	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1438777	1.00[ASN][1000 genomes]
rs17025376	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17025396	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17487051	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17584168	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17725791	1.00[ASN][1000 genomes]
rs17778070	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2157932	1.00[ASN][1000 genomes]
rs28394720	1.00[ASN][1000 genomes]
rs28407733	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28417942	1.00[ASN][1000 genomes]
rs28478129	1.00[ASN][1000 genomes]
rs28491207	1.00[ASN][1000 genomes]
rs28498848	1.00[ASN][1000 genomes]
rs28544066	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28557410	1.00[ASN][1000 genomes]
rs28579751	1.00[ASN][1000 genomes]
rs28636985	1.00[ASN][1000 genomes]
rs28787362	1.00[ASN][1000 genomes]
rs28860488	1.00[ASN][1000 genomes]
rs35983161	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4518225	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs66979066	1.00[ASN][1000 genomes]
rs67997931	1.00[ASN][1000 genomes]
rs6835584	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6836835	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6846370	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6854659	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72719869	1.00[ASN][1000 genomes]
rs756862	1.00[ASN][1000 genomes]
rs7665428	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7676142	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7676393	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7688521	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9654219	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9654230	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9992331	1.00[ASN][1000 genomes]
rs9993762	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9994141	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461677	chr4:149794284-149903982	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv595686	chr4:149794284-149903982	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv470083	chr4:149817052-149903982	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149864800-149867400	Enhancers	Fetal Brain Male	brain
2	chr4:149865000-149868400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:149865200-149867200	Enhancers	Brain Germinal Matrix	brain
4	chr4:149866000-149866400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr4:149866000-149866400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr4:149866200-149866400	Flanking Active TSS	Fetal Brain Female	brain

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