Variant report

Variant	rs17668007
Chromosome Location	chr8:118558226-118558227
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10505295	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11997337	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16889833	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16889836	1.00[GIH][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16889867	0.84[EUR][1000 genomes]
rs17667915	1.00[GIH][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17668001	0.80[AMR][1000 genomes]
rs17740505	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28571816	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62521183	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62521198	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62521200	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62521228	0.81[EUR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118542000-118558600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr8:118546600-118558400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr8:118546600-118558600	Weak transcription	Primary B cells from cord blood	blood
4	chr8:118546600-118559400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr8:118546600-118561600	Weak transcription	Osteobl	bone
6	chr8:118546800-118561600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr8:118546800-118562200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:118547400-118558400	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr8:118548000-118560400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr8:118548400-118558400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr8:118554200-118561600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:118554600-118558400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr8:118554600-118558400	Weak transcription	Dnd41	blood
14	chr8:118555000-118561800	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr8:118558000-118564400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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