Variant report
| Variant | rs62521183 |
|---|---|
| Chromosome Location | chr8:118508504-118508505 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10505295 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs10505315 | 0.81[EUR][1000 genomes] |
| rs11990107 | 0.81[EUR][1000 genomes] |
| rs11997337 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs16889833 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs16889836 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs16889862 | 0.81[EUR][1000 genomes] |
| rs17667915 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs17668007 | 0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs17740505 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs28571816 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs62521198 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs62521200 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs62521203 | 0.81[EUR][1000 genomes] |
| rs62521228 | 0.85[EUR][1000 genomes] |
| rs62521229 | 0.82[EUR][1000 genomes] |
| rs62521231 | 0.81[EUR][1000 genomes] |
| rs717349 | 0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs749492 | 0.81[EUR][1000 genomes] |
| rs755982 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv428525 | chr8:118384428-118543349 | Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv831436 | chr8:118384463-118543297 | Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:118508400-118509600 | Enhancers | Fetal Brain Male | brain |
