Variant report

Variant	rs11990107
Chromosome Location	chr8:118533312-118533313
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:43784937..43785713-chr8:118532588..118533360,2	Hela-S3	cervix:
2	chr1:10003043..10003645-chr8:118532895..118533881,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000067369	Chromatin interaction
ENSG00000173614	Chromatin interaction
ENSG00000162441	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10505295	0.87[EUR][1000 genomes]
rs11997337	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16889833	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16889836	0.85[EUR][1000 genomes]
rs16889862	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16889867	0.86[EUR][1000 genomes]
rs17667915	0.86[EUR][1000 genomes]
rs17668001	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17740505	0.86[EUR][1000 genomes]
rs28571816	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62521183	0.81[EUR][1000 genomes]
rs62521198	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62521200	0.86[EUR][1000 genomes]
rs62521203	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs717349	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428525	chr8:118384428-118543349	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv831436	chr8:118384463-118543297	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118531800-118533400	Active TSS	Adipose Nuclei	Adipose
2	chr8:118532000-118533600	Active TSS	Primary T helper naive cells from peripheral blood	blood
3	chr8:118532000-118533800	Active TSS	Duodenum Mucosa	Duodenum
4	chr8:118532000-118533800	Active TSS	Rectal Mucosa Donor 31	rectum
5	chr8:118532000-118534000	Active TSS	Breast Myoepithelial Primary Cells	Breast
6	chr8:118532000-118534400	Active TSS	Brain Anterior Caudate	brain
7	chr8:118532000-118534400	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr8:118532200-118533400	Active TSS	Primary T helper cells fromperipheralblood	blood
9	chr8:118532200-118533400	Active TSS	Placenta	Placenta
10	chr8:118532200-118533600	Active TSS	Primary monocytes fromperipheralblood	blood
11	chr8:118532200-118533600	Active TSS	Primary T cells from cord blood	blood
12	chr8:118532200-118533600	Active TSS	Primary T helper cells PMA-I stimulated	--
13	chr8:118532200-118533600	Active TSS	Brain Germinal Matrix	brain
14	chr8:118532200-118533800	Active TSS	Primary hematopoietic stem cells short term culture	blood
15	chr8:118532200-118533800	Active TSS	Primary T killer memory cells from peripheral blood	blood
16	chr8:118532200-118533800	Active TSS	Fetal Intestine Small	intestine
17	chr8:118532200-118533800	Active TSS	Skeletal Muscle Female	skeletal muscle
18	chr8:118532200-118534000	Active TSS	iPS-15b Cell Line	embryonic stem cell
19	chr8:118532200-118534000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr8:118532200-118534000	Active TSS	Fetal Intestine Large	intestine
21	chr8:118532200-118534000	Active TSS	Ovary	ovary
22	chr8:118532200-118534200	Active TSS	Psoas Muscle	Psoas
23	chr8:118532200-118534400	Active TSS	Rectal Smooth Muscle	rectum
24	chr8:118532200-118534400	Active TSS	Stomach Smooth Muscle	stomach
25	chr8:118532200-118535200	Active TSS	K562	blood
26	chr8:118532400-118533400	Active TSS	Primary B cells from peripheral blood	blood
27	chr8:118532400-118533400	Active TSS	Liver	Liver
28	chr8:118532400-118533600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr8:118532400-118533600	Active TSS	iPS-20b Cell Line	embryonic stem cell
30	chr8:118532400-118533600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr8:118532400-118533600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
32	chr8:118532400-118533600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
33	chr8:118532400-118533600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
34	chr8:118532400-118533600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr8:118532400-118533600	Active TSS	Brain Angular Gyrus	brain
36	chr8:118532400-118533600	Active TSS	Duodenum Smooth Muscle	Duodenum
37	chr8:118532400-118533600	Active TSS	Esophagus	oesophagus
38	chr8:118532400-118533600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
39	chr8:118532400-118533600	Active TSS	Gastric	stomach
40	chr8:118532400-118533600	Active TSS	Lung	lung
41	chr8:118532400-118533600	Active TSS	Pancreas	Pancrea
42	chr8:118532400-118533600	Active TSS	Sigmoid Colon	Sigmoid Colon
43	chr8:118532400-118533600	Active TSS	Small Intestine	intestine
44	chr8:118532400-118533600	Active TSS	Osteobl	bone
45	chr8:118532400-118533800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
46	chr8:118532400-118533800	Active TSS	H1 Cell Line	embryonic stem cell
47	chr8:118532400-118533800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr8:118532400-118533800	Active TSS	HUES48 Cell Line	embryonic stem cell
49	chr8:118532400-118533800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr8:118532400-118533800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links