Variant report

Variant	rs16889862
Chromosome Location	chr8:118554264-118554265
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:118550680..118553091-chr8:118554159..118556235,2	K562	blood:
2	chr8:118549438..118551807-chr8:118552833..118555357,2	MCF-7	breast:
3	chr8:118553859..118555859-chr8:118575952..118578864,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10505295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10505315	0.91[ASN][1000 genomes]
rs11990107	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11992669	1.00[JPT][hapmap]
rs11997337	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16889833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16889836	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];0.94[MKK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16889867	0.86[EUR][1000 genomes]
rs17667915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17668001	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17668076	0.86[ASN][1000 genomes]
rs17668088	0.86[ASN][1000 genomes]
rs17740505	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28571816	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3937768	0.84[ASN][1000 genomes]
rs62521183	0.81[EUR][1000 genomes]
rs62521198	0.87[EUR][1000 genomes]
rs62521200	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62521203	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62521228	0.89[ASN][1000 genomes]
rs62521229	0.89[ASN][1000 genomes]
rs62521231	0.91[ASN][1000 genomes]
rs717349	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs749492	0.91[ASN][1000 genomes]
rs755982	0.91[ASN][1000 genomes]
rs922587	0.86[ASN][1000 genomes]

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118534400-118557600	Weak transcription	Fetal Brain Male	brain
2	chr8:118542000-118558600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr8:118546600-118554400	Weak transcription	Left Ventricle	heart
4	chr8:118546600-118554600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr8:118546600-118554600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr8:118546600-118554800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr8:118546600-118554800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr8:118546600-118554800	Weak transcription	Pancreas	Pancrea
9	chr8:118546600-118555000	Weak transcription	Fetal Thymus	thymus
10	chr8:118546600-118555000	Weak transcription	Thymus	Thymus
11	chr8:118546600-118555000	Weak transcription	NHLF	lung
12	chr8:118546600-118555200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr8:118546600-118555200	Weak transcription	Fetal Stomach	stomach
14	chr8:118546600-118555200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr8:118546600-118555800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr8:118546600-118555800	Weak transcription	Lung	lung
17	chr8:118546600-118556000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:118546600-118556000	Weak transcription	Colon Smooth Muscle	Colon
19	chr8:118546600-118557200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr8:118546600-118557600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr8:118546600-118557600	Weak transcription	Fetal Intestine Large	intestine
22	chr8:118546600-118558000	Weak transcription	Esophagus	oesophagus
23	chr8:118546600-118558000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr8:118546600-118558200	Weak transcription	Fetal Intestine Small	intestine
25	chr8:118546600-118558200	Weak transcription	Spleen	Spleen
26	chr8:118546600-118558400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr8:118546600-118558600	Weak transcription	Primary B cells from cord blood	blood
28	chr8:118546600-118559400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr8:118546600-118561600	Weak transcription	Osteobl	bone
30	chr8:118546800-118554400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr8:118546800-118554400	Weak transcription	HSMM	muscle
32	chr8:118546800-118554800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr8:118546800-118557200	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr8:118546800-118558000	Weak transcription	Adipose Nuclei	Adipose
35	chr8:118546800-118561600	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr8:118546800-118562200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr8:118547000-118554800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr8:118547000-118554800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr8:118547000-118555000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr8:118547000-118555200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr8:118547000-118557000	Weak transcription	Fetal Muscle Leg	muscle
42	chr8:118547000-118557800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr8:118547200-118555400	Weak transcription	Primary B cells from peripheral blood	blood
44	chr8:118547400-118558400	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr8:118548000-118560400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr8:118548200-118556400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr8:118548200-118556600	Weak transcription	Stomach Smooth Muscle	stomach
48	chr8:118548400-118556000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr8:118548400-118558400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr8:118548600-118555200	Weak transcription	Ovary	ovary

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