Variant report

Variant	rs10505295
Chromosome Location	chr8:118542735-118542736
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10505315	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11990107	0.87[EUR][1000 genomes]
rs11997337	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16889833	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16889836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16889862	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17667915	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17668001	0.83[EUR][1000 genomes]
rs17668007	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17668076	0.89[ASN][1000 genomes]
rs17668088	0.89[ASN][1000 genomes]
rs17740505	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28571816	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3937768	0.87[ASN][1000 genomes]
rs62521183	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62521198	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62521200	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62521203	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62521228	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62521229	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62521231	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs717349	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs749492	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs755982	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs922587	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428525	chr8:118384428-118543349	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv831436	chr8:118384463-118543297	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118533600-118543200	Weak transcription	Placenta	Placenta
2	chr8:118533600-118545800	Weak transcription	Esophagus	oesophagus
3	chr8:118533600-118546000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:118533600-118546000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:118533600-118546400	Weak transcription	Gastric	stomach
6	chr8:118533600-118546400	Weak transcription	Pancreas	Pancrea
7	chr8:118533600-118546400	Weak transcription	Spleen	Spleen
8	chr8:118533800-118543400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr8:118533800-118545600	Weak transcription	Fetal Intestine Small	intestine
10	chr8:118533800-118545800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr8:118533800-118546400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr8:118533800-118553800	Weak transcription	Stomach Mucosa	stomach
13	chr8:118534200-118543000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr8:118534200-118543200	Weak transcription	Brain Germinal Matrix	brain
15	chr8:118534200-118545600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr8:118534200-118545600	Weak transcription	Colonic Mucosa	Colon
17	chr8:118534200-118545800	Weak transcription	Right Ventricle	heart
18	chr8:118534200-118546000	Weak transcription	HSMMtube	muscle
19	chr8:118534200-118546000	Weak transcription	NH-A	brain
20	chr8:118534400-118543000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr8:118534400-118543000	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr8:118534400-118543200	Weak transcription	Brain Anterior Caudate	brain
23	chr8:118534400-118543200	Weak transcription	Brain Hippocampus Middle	brain
24	chr8:118534400-118543400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr8:118534400-118543400	Weak transcription	HUVEC	blood vessel
26	chr8:118534400-118545600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr8:118534400-118545600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr8:118534400-118545600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr8:118534400-118545600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr8:118534400-118545600	Weak transcription	NHEK	skin
31	chr8:118534400-118545800	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr8:118534400-118546000	Weak transcription	Aorta	Aorta
33	chr8:118534400-118546000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr8:118534400-118546000	Weak transcription	Psoas Muscle	Psoas
35	chr8:118534400-118546000	Weak transcription	Rectal Smooth Muscle	rectum
36	chr8:118534400-118546000	Weak transcription	Small Intestine	intestine
37	chr8:118534400-118546000	Weak transcription	HMEC	breast
38	chr8:118534400-118546200	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr8:118534400-118557600	Weak transcription	Fetal Brain Male	brain
40	chr8:118534600-118543200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr8:118534600-118545800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr8:118534800-118542800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr8:118534800-118542800	Weak transcription	Brain Angular Gyrus	brain
44	chr8:118534800-118545600	Weak transcription	Thymus	Thymus
45	chr8:118534800-118546000	Weak transcription	Fetal Heart	heart
46	chr8:118534800-118546000	Weak transcription	A549	lung
47	chr8:118534800-118546000	Weak transcription	NHLF	lung
48	chr8:118535200-118550400	Weak transcription	K562	blood
49	chr8:118535400-118543000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr8:118536200-118545800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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