Variant report

Variant	rs16889836
Chromosome Location	chr8:118541837-118541838
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:118540222..118542187-chr8:118547991..118550009,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10505295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10505315	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11990107	0.85[EUR][1000 genomes]
rs11992669	1.00[JPT][hapmap]
rs11997337	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16889833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16889862	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17667915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17668001	0.82[EUR][1000 genomes]
rs17668007	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17668076	0.89[ASN][1000 genomes]
rs17668088	0.89[ASN][1000 genomes]
rs17740505	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28571816	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3937768	0.87[ASN][1000 genomes]
rs62521183	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62521198	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62521200	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62521203	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62521228	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62521229	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62521231	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs717349	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs749492	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs755982	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs922587	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428525	chr8:118384428-118543349	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv831436	chr8:118384463-118543297	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118533600-118543200	Weak transcription	Placenta	Placenta
2	chr8:118533600-118545800	Weak transcription	Esophagus	oesophagus
3	chr8:118533600-118546000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:118533600-118546000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:118533600-118546400	Weak transcription	Gastric	stomach
6	chr8:118533600-118546400	Weak transcription	Pancreas	Pancrea
7	chr8:118533600-118546400	Weak transcription	Spleen	Spleen
8	chr8:118533800-118543400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr8:118533800-118545600	Weak transcription	Fetal Intestine Small	intestine
10	chr8:118533800-118545800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr8:118533800-118546400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr8:118533800-118553800	Weak transcription	Stomach Mucosa	stomach
13	chr8:118534000-118542000	Weak transcription	HSMM	muscle
14	chr8:118534200-118543000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr8:118534200-118543200	Weak transcription	Brain Germinal Matrix	brain
16	chr8:118534200-118545600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr8:118534200-118545600	Weak transcription	Colonic Mucosa	Colon
18	chr8:118534200-118545800	Weak transcription	Right Ventricle	heart
19	chr8:118534200-118546000	Weak transcription	HSMMtube	muscle
20	chr8:118534200-118546000	Weak transcription	NH-A	brain
21	chr8:118534400-118542400	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr8:118534400-118543000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr8:118534400-118543000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr8:118534400-118543200	Weak transcription	Brain Anterior Caudate	brain
25	chr8:118534400-118543200	Weak transcription	Brain Hippocampus Middle	brain
26	chr8:118534400-118543400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr8:118534400-118543400	Weak transcription	HUVEC	blood vessel
28	chr8:118534400-118545600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr8:118534400-118545600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr8:118534400-118545600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr8:118534400-118545600	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr8:118534400-118545600	Weak transcription	NHEK	skin
33	chr8:118534400-118545800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr8:118534400-118546000	Weak transcription	Aorta	Aorta
35	chr8:118534400-118546000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr8:118534400-118546000	Weak transcription	Psoas Muscle	Psoas
37	chr8:118534400-118546000	Weak transcription	Rectal Smooth Muscle	rectum
38	chr8:118534400-118546000	Weak transcription	Small Intestine	intestine
39	chr8:118534400-118546000	Weak transcription	HMEC	breast
40	chr8:118534400-118546200	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr8:118534400-118557600	Weak transcription	Fetal Brain Male	brain
42	chr8:118534600-118542000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr8:118534600-118543200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr8:118534600-118545800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr8:118534800-118542000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr8:118534800-118542800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr8:118534800-118542800	Weak transcription	Brain Angular Gyrus	brain
48	chr8:118534800-118545600	Weak transcription	Thymus	Thymus
49	chr8:118534800-118546000	Weak transcription	Fetal Heart	heart
50	chr8:118534800-118546000	Weak transcription	A549	lung

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