Variant report
| Variant | rs17869347 |
|---|---|
| Chromosome Location | chr7:126710378-126710379 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
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rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs17865088 | 0.88[YRI][hapmap] |
| rs17865221 | 1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17865283 | 1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17865293 | 0.88[YRI][hapmap];0.89[AFR][1000 genomes] |
| rs17865857 | 1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17865862 | 0.88[YRI][hapmap];0.89[AFR][1000 genomes] |
| rs17866035 | 0.87[YRI][hapmap];0.84[AFR][1000 genomes] |
| rs17866144 | 0.88[YRI][hapmap] |
| rs17866151 | 0.89[AFR][1000 genomes] |
| rs17866240 | 1.00[YRI][hapmap] |
| rs17866251 | 0.88[YRI][hapmap] |
| rs17866881 | 0.88[YRI][hapmap];0.89[AFR][1000 genomes] |
| rs17866945 | 1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17866947 | 1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17867033 | 0.88[YRI][hapmap] |
| rs17867119 | 1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17867200 | 1.00[AMR][1000 genomes] |
| rs17867202 | 1.00[YRI][hapmap] |
| rs17867252 | 1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17867319 | 0.84[AFR][1000 genomes] |
| rs17869249 | 0.87[YRI][hapmap];0.84[AFR][1000 genomes] |
| rs17875028 | 1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831121 | chr7:126593363-126774413 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv889189 | chr7:126699088-126963028 | Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
