Variant report

Variant	rs17887192
Chromosome Location	chr11:102188569-102188570
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:102175561..102178536-chr11:102186960..102189576,2	MCF-7	breast:
2	chr11:102183249..102185212-chr11:102186159..102188587,3	K562	blood:
3	chr11:102176632..102179702-chr11:102185117..102189773,6	MCF-7	breast:
4	chr11:102188098..102191031-chr11:102194628..102197426,3	MCF-7	breast:
5	chr11:102187104..102190463-chr11:102217868..102220185,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000270868	Chromatin interaction
ENSG00000212466	Chromatin interaction
ENSG00000271600	Chromatin interaction
ENSG00000110330	Chromatin interaction
ENSG00000023445	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12281951	0.91[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286239	0.87[MKK][hapmap];1.00[ASN][1000 genomes]
rs12286551	0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17097416	1.00[AMR][1000 genomes]
rs17097419	1.00[AMR][1000 genomes]
rs17097421	1.00[AMR][1000 genomes]
rs17098241	1.00[AMR][1000 genomes]
rs17878891	1.00[AMR][1000 genomes]
rs17883028	1.00[AMR][1000 genomes]
rs17884964	1.00[AMR][1000 genomes]
rs1981420	1.00[AMR][1000 genomes]
rs7114012	1.00[AMR][1000 genomes]
rs7121665	1.00[ASN][1000 genomes]
rs73577836	1.00[AMR][1000 genomes]
rs73577844	1.00[AMR][1000 genomes]
rs73577845	1.00[AMR][1000 genomes]
rs73577849	1.00[AMR][1000 genomes]
rs73577861	1.00[AMR][1000 genomes]
rs73577866	1.00[AMR][1000 genomes]
rs73577873	1.00[AMR][1000 genomes]
rs73577877	1.00[AMR][1000 genomes]
rs73582003	1.00[AMR][1000 genomes]
rs73582018	1.00[AMR][1000 genomes]
rs7942413	1.00[AMR][1000 genomes]
rs7945513	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052348	chr11:101987090-102255753	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv556141	chr11:101988061-102207851	Weak transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1050961	chr11:101993880-102253717	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv1051735	chr11:101993880-102255753	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv530646	chr11:102000840-102238992	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	esv3514195	chr11:102118479-102348362	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	esv3514197	chr11:102118479-102348362	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102187200-102189600	Flanking Active TSS	NHEK	skin
2	chr11:102187200-102191000	Active TSS	Rectal Smooth Muscle	rectum
3	chr11:102187400-102188600	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr11:102187400-102189000	Active TSS	Primary T helper cells PMA-I stimulated	--
5	chr11:102187400-102190400	Active TSS	A549	lung
6	chr11:102187400-102191400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr11:102187400-102191400	Active TSS	GM12878-XiMat	blood
8	chr11:102187600-102188600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:102187600-102188600	Active TSS	Monocytes-CD14+_RO01746	blood
10	chr11:102187600-102188800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:102187600-102188800	Active TSS	Aorta	Aorta
12	chr11:102187600-102188800	Active TSS	Colon Smooth Muscle	Colon
13	chr11:102187600-102188800	Flanking Active TSS	HMEC	breast
14	chr11:102187600-102189000	Active TSS	Primary T cells fromperipheralblood	blood
15	chr11:102187600-102189000	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr11:102187600-102189000	Active TSS	Stomach Smooth Muscle	stomach
17	chr11:102187600-102189200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:102187600-102189200	Active TSS	Primary T helper naive cells from peripheral blood	blood
19	chr11:102187600-102189200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
20	chr11:102187600-102189200	Active TSS	Thymus	Thymus
21	chr11:102187600-102189400	Active TSS	Right Atrium	heart
22	chr11:102187600-102190200	Active TSS	Breast Myoepithelial Primary Cells	Breast
23	chr11:102187600-102191000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
24	chr11:102187600-102192400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
25	chr11:102187800-102188600	Active TSS	H1 Cell Line	embryonic stem cell
26	chr11:102187800-102188600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr11:102187800-102188600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:102187800-102188600	Active TSS	Cortex derived primary cultured neurospheres	brain
29	chr11:102187800-102188600	Active TSS	Brain Anterior Caudate	brain
30	chr11:102187800-102188600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
31	chr11:102187800-102188600	Active TSS	Fetal Kidney	kidney
32	chr11:102187800-102188600	Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr11:102187800-102188600	Active TSS	Ovary	ovary
34	chr11:102187800-102188600	Flanking Active TSS	K562	blood
35	chr11:102187800-102188800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
36	chr11:102187800-102188800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr11:102187800-102188800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
38	chr11:102187800-102188800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
39	chr11:102187800-102188800	Active TSS	Primary T cells from cord blood	blood
40	chr11:102187800-102188800	Active TSS	Liver	Liver
41	chr11:102187800-102188800	Active TSS	Brain Angular Gyrus	brain
42	chr11:102187800-102188800	Flanking Active TSS	Fetal Muscle Leg	muscle
43	chr11:102187800-102188800	Flanking Active TSS	Placenta	Placenta
44	chr11:102187800-102188800	Active TSS	Right Ventricle	heart
45	chr11:102187800-102188800	Flanking Active TSS	HUVEC	blood vessel
46	chr11:102187800-102188800	Flanking Active TSS	Osteobl	bone
47	chr11:102187800-102189000	Active TSS	Fetal Intestine Large	intestine
48	chr11:102187800-102189000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
49	chr11:102187800-102189000	Active TSS	Small Intestine	intestine
50	chr11:102187800-102189200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

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