Variant report

Variant	rs73582018
Chromosome Location	chr11:102033539-102033540
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12281951	1.00[AMR][1000 genomes]
rs12286551	1.00[AMR][1000 genomes]
rs17097416	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17097419	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17097421	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17878891	1.00[AMR][1000 genomes]
rs17883028	1.00[AMR][1000 genomes]
rs17884964	1.00[AMR][1000 genomes]
rs17887192	1.00[AMR][1000 genomes]
rs1981420	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57068527	1.00[AMR][1000 genomes]
rs7112028	1.00[AMR][1000 genomes]
rs7114012	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7119836	1.00[AMR][1000 genomes]
rs7127853	1.00[AMR][1000 genomes]
rs73577815	1.00[AMR][1000 genomes]
rs73577817	1.00[AMR][1000 genomes]
rs73577818	1.00[AMR][1000 genomes]
rs73577836	1.00[AMR][1000 genomes]
rs73577844	1.00[AMR][1000 genomes]
rs73577845	1.00[AMR][1000 genomes]
rs73577849	1.00[AMR][1000 genomes]
rs73577861	1.00[AMR][1000 genomes]
rs73577866	1.00[AMR][1000 genomes]
rs73577873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577877	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582003	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73593086	1.00[AMR][1000 genomes]
rs73595173	1.00[AMR][1000 genomes]
rs73595175	1.00[AMR][1000 genomes]
rs7927171	1.00[AMR][1000 genomes]
rs7937545	1.00[AMR][1000 genomes]
rs7939800	1.00[AMR][1000 genomes]
rs7940270	1.00[AMR][1000 genomes]
rs7942413	1.00[AMR][1000 genomes]
rs7949718	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1052348	chr11:101987090-102255753	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv556141	chr11:101988061-102207851	Weak transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1050961	chr11:101993880-102253717	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv1051735	chr11:101993880-102255753	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
7	nsv530646	chr11:102000840-102238992	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
8	nsv832251	chr11:102012295-102181744	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv1043388	chr11:102017719-102172857	Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101998600-102034200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr11:102000800-102034000	Weak transcription	Lung	lung
3	chr11:102010400-102039000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:102012600-102034200	Weak transcription	Fetal Muscle Leg	muscle
5	chr11:102020400-102049000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr11:102023400-102034000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:102023800-102034000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:102024000-102034000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:102025600-102039000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr11:102026400-102034000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr11:102026400-102059400	Weak transcription	Fetal Brain Male	brain
12	chr11:102026600-102045400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr11:102027800-102037200	Weak transcription	Fetal Kidney	kidney
14	chr11:102028000-102062800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr11:102028200-102035600	Weak transcription	Psoas Muscle	Psoas
16	chr11:102028600-102033800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr11:102028600-102033800	Weak transcription	NHDF-Ad	bronchial
18	chr11:102028600-102034000	Weak transcription	Adipose Nuclei	Adipose
19	chr11:102028600-102039000	Weak transcription	NHLF	lung
20	chr11:102028600-102055200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr11:102028800-102033800	Weak transcription	HSMM	muscle
22	chr11:102029200-102035600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr11:102029200-102045400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr11:102029200-102067600	Weak transcription	HSMMtube	muscle
25	chr11:102029400-102042000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr11:102029400-102050000	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr11:102030000-102036000	Weak transcription	Brain Anterior Caudate	brain
28	chr11:102030200-102033800	Weak transcription	Gastric	stomach
29	chr11:102030200-102034000	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr11:102030200-102041400	Weak transcription	HUVEC	blood vessel
31	chr11:102030200-102048600	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr11:102030600-102042200	Weak transcription	Stomach Mucosa	stomach
33	chr11:102031200-102043400	Weak transcription	Pancreas	Pancrea
34	chr11:102031600-102034200	Weak transcription	Hela-S3	cervix
35	chr11:102031600-102037200	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr11:102031600-102039200	Weak transcription	Colon Smooth Muscle	Colon
37	chr11:102031800-102042600	Weak transcription	Aorta	Aorta
38	chr11:102032400-102033600	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr11:102032600-102038000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:102032800-102034000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:102033000-102033600	Strong transcription	A549	lung
42	chr11:102033000-102034000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr11:102033000-102034200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr11:102033000-102034600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:102033000-102034600	Genic enhancers	Ovary	ovary
46	chr11:102033000-102034800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr11:102033000-102034800	Strong transcription	HMEC	breast
48	chr11:102033000-102035000	Strong transcription	Osteobl	bone
49	chr11:102033000-102035200	Strong transcription	Muscle Satellite Cultured Cells	--
50	chr11:102033000-102036200	Strong transcription	Fetal Intestine Large	intestine

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