Variant report
| Variant | rs73577817 |
|---|---|
| Chromosome Location | chr11:101978314-101978315 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr11:101978314-101978514 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| YAP1 | TF binding region |
| ENSG00000260008 | TF binding region |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs17097416 | 1.00[AMR][1000 genomes] |
| rs17097419 | 1.00[AMR][1000 genomes] |
| rs17097421 | 1.00[AMR][1000 genomes] |
| rs1981420 | 1.00[AMR][1000 genomes] |
| rs57068527 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7112028 | 1.00[AMR][1000 genomes] |
| rs7114012 | 1.00[AMR][1000 genomes] |
| rs7117894 | 0.87[AFR][1000 genomes] |
| rs7119836 | 1.00[AMR][1000 genomes] |
| rs7127853 | 1.00[AMR][1000 genomes] |
| rs73577815 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73577818 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73577836 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73577844 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73577845 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73577849 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73577861 | 1.00[AMR][1000 genomes] |
| rs73577866 | 1.00[AMR][1000 genomes] |
| rs73577873 | 1.00[AMR][1000 genomes] |
| rs73577877 | 1.00[AMR][1000 genomes] |
| rs73582003 | 1.00[AMR][1000 genomes] |
| rs73582018 | 1.00[AMR][1000 genomes] |
| rs73593086 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73595173 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73595175 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7927171 | 1.00[AMR][1000 genomes] |
| rs7937545 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7939800 | 1.00[AMR][1000 genomes] |
| rs7940270 | 1.00[AMR][1000 genomes] |
| rs7949718 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3362945 | chr11:101736547-102114246 | Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv898333 | chr11:101832670-102079986 | Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:101968000-101980400 | Weak transcription | Right Atrium | heart |
| 2 | chr11:101976400-101979800 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
| 3 | chr11:101978200-101979400 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
