Variant report

Variant	rs7937545
Chromosome Location	chr11:101983715-101983716
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:101983625..101985625-chr11:101986224..101988085,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12281951	1.00[AMR][1000 genomes]
rs12286551	1.00[AMR][1000 genomes]
rs17097416	1.00[AMR][1000 genomes]
rs17097419	1.00[AMR][1000 genomes]
rs17097421	1.00[AMR][1000 genomes]
rs1981420	1.00[AMR][1000 genomes]
rs57068527	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7112028	1.00[AMR][1000 genomes]
rs7114012	1.00[AMR][1000 genomes]
rs7117894	0.87[AFR][1000 genomes]
rs7119836	1.00[AMR][1000 genomes]
rs7127853	1.00[AMR][1000 genomes]
rs73577815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577861	1.00[AMR][1000 genomes]
rs73577866	1.00[AMR][1000 genomes]
rs73577873	1.00[AMR][1000 genomes]
rs73577877	1.00[AMR][1000 genomes]
rs73582003	1.00[AMR][1000 genomes]
rs73582018	1.00[AMR][1000 genomes]
rs73593086	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73595173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73595175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7927171	1.00[AMR][1000 genomes]
rs7939800	1.00[AMR][1000 genomes]
rs7940270	1.00[AMR][1000 genomes]
rs7949718	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101980000-101984000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:101980000-101984000	Active TSS	iPS-20b Cell Line	embryonic stem cell
3	chr11:101980000-101984400	Active TSS	Stomach Smooth Muscle	stomach
4	chr11:101980200-101983800	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr11:101980200-101983800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr11:101980200-101983800	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr11:101980200-101984000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:101980200-101984000	Active TSS	Fetal Intestine Large	intestine
9	chr11:101980200-101984400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:101980200-101985000	Active TSS	Aorta	Aorta
11	chr11:101980400-101983800	Active TSS	Muscle Satellite Cultured Cells	--
12	chr11:101980400-101983800	Active TSS	Fetal Lung	lung
13	chr11:101980400-101984000	Active TSS	A549	lung
14	chr11:101980400-101984200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:101980400-101984200	Active TSS	Ovary	ovary
16	chr11:101980400-101984200	Active TSS	Right Atrium	heart
17	chr11:101980400-101984400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:101980400-101984800	Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr11:101980400-101984800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:101980400-101984800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:101980400-101984800	Active TSS	Breast Myoepithelial Primary Cells	Breast
22	chr11:101980400-101984800	Active TSS	NHDF-Ad	bronchial
23	chr11:101980600-101984000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:101980600-101984000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:101980600-101984000	Active TSS	Placenta	Placenta
26	chr11:101980600-101984000	Active TSS	Hela-S3	cervix
27	chr11:101980600-101984000	Active TSS	NHEK	skin
28	chr11:101980600-101984400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr11:101980600-101984800	Active TSS	Skeletal Muscle Male	skeletal muscle
30	chr11:101980600-101984800	Active TSS	HepG2	liver
31	chr11:101980600-101984800	Active TSS	NHLF	lung
32	chr11:101980800-101984200	Active TSS	Duodenum Mucosa	Duodenum
33	chr11:101980800-101984800	Active TSS	HMEC	breast
34	chr11:101981200-101984800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr11:101982000-101984000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr11:101982000-101984800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:101982000-101984800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:101982000-101986400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr11:101982600-101984200	Active TSS	Duodenum Smooth Muscle	Duodenum
40	chr11:101982800-101989200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:101983000-101984400	Active TSS	Skeletal Muscle Female	skeletal muscle
42	chr11:101983200-101983800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
43	chr11:101983400-101983800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
44	chr11:101983400-101984200	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
45	chr11:101983400-101984400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
46	chr11:101983400-101984600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr11:101983400-101984800	Weak transcription	Gastric	stomach
48	chr11:101983400-101998200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:101983600-101983800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr11:101983600-101983800	Active TSS	iPS-18 Cell Line	embryonic stem cell

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