Variant report

Variant	rs73577844
Chromosome Location	chr11:101986967-101986968
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:101985245..101987605-chr11:102138237..102140832,2	MCF-7	breast:
2	chr11:101981472..101985692-chr11:101986825..101990078,4	MCF-7	breast:
3	chr11:101983625..101985625-chr11:101986224..101988085,2	K562	blood:

Variant related genes	Relation type
ENSG00000137693	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12281951	1.00[AMR][1000 genomes]
rs12286551	1.00[AMR][1000 genomes]
rs17097416	1.00[AMR][1000 genomes]
rs17097419	1.00[AMR][1000 genomes]
rs17097421	1.00[AMR][1000 genomes]
rs17887192	1.00[AMR][1000 genomes]
rs1981420	1.00[AMR][1000 genomes]
rs57068527	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7112028	1.00[AMR][1000 genomes]
rs7114012	1.00[AMR][1000 genomes]
rs7117894	0.87[AFR][1000 genomes]
rs7119836	1.00[AMR][1000 genomes]
rs7127853	1.00[AMR][1000 genomes]
rs73577815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577861	1.00[AMR][1000 genomes]
rs73577866	1.00[AMR][1000 genomes]
rs73577873	1.00[AMR][1000 genomes]
rs73577877	1.00[AMR][1000 genomes]
rs73582003	1.00[AMR][1000 genomes]
rs73582018	1.00[AMR][1000 genomes]
rs73593086	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73595173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73595175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7927171	1.00[AMR][1000 genomes]
rs7937545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7939800	1.00[AMR][1000 genomes]
rs7940270	1.00[AMR][1000 genomes]
rs7949718	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101982800-101989200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:101983400-101998200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:101983600-101987000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:101983600-101989200	Weak transcription	Esophagus	oesophagus
5	chr11:101983600-101990800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr11:101983600-101990800	Weak transcription	Brain Anterior Caudate	brain
7	chr11:101983600-101990800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr11:101983600-101990800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr11:101983600-101991000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:101983600-101998000	Weak transcription	Right Ventricle	heart
11	chr11:101983600-101998200	Weak transcription	Colonic Mucosa	Colon
12	chr11:101983600-102014800	Weak transcription	Pancreas	Pancrea
13	chr11:101984000-101987200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:101984000-101987400	Enhancers	Placenta Amnion	Placenta Amnion
15	chr11:101984000-101991600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:101984400-101988600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr11:101984400-101991600	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr11:101984600-101987400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:101984600-101988200	Genic enhancers	NH-A	brain
20	chr11:101984800-101987400	Strong transcription	Placenta	Placenta
21	chr11:101984800-101988000	Genic enhancers	Fetal Lung	lung
22	chr11:101984800-101988800	Genic enhancers	HSMM	muscle
23	chr11:101984800-101991600	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:101985000-101987000	Genic enhancers	Adipose Nuclei	Adipose
25	chr11:101985000-101987400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:101985000-101988800	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:101985000-101989200	Weak transcription	Fetal Stomach	stomach
28	chr11:101985000-101991400	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr11:101985200-101987000	Genic enhancers	HMEC	breast
30	chr11:101985200-101988200	Genic enhancers	NHDF-Ad	bronchial
31	chr11:101985200-101988600	Enhancers	Fetal Intestine Small	intestine
32	chr11:101985200-101989200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr11:101985200-101989200	Weak transcription	Lung	lung
34	chr11:101985200-101989800	Weak transcription	Fetal Brain Male	brain
35	chr11:101985200-101998000	Weak transcription	Gastric	stomach
36	chr11:101985200-102009200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr11:101985600-101988200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:101985600-101991200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr11:101985800-101987000	Enhancers	H1 Cell Line	embryonic stem cell
40	chr11:101985800-101987000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr11:101985800-101987200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
42	chr11:101985800-101987400	Enhancers	Fetal Heart	heart
43	chr11:101985800-101990800	Enhancers	Fetal Intestine Large	intestine
44	chr11:101986000-101987200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
45	chr11:101986000-101987200	Transcr. at gene 5' and 3'	NHLF	lung
46	chr11:101986000-101987600	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr11:101986000-101988200	Enhancers	Rectal Mucosa Donor 29	rectum
48	chr11:101986000-101988200	Genic enhancers	NHEK	skin
49	chr11:101986000-101988400	Enhancers	Liver	Liver
50	chr11:101986000-101991000	Enhancers	Rectal Mucosa Donor 31	rectum

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