Variant report

Variant	rs7927171
Chromosome Location	chr11:101890632-101890633
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs17097416	1.00[AMR][1000 genomes]
rs17097419	1.00[AMR][1000 genomes]
rs17097421	1.00[AMR][1000 genomes]
rs1981420	1.00[AMR][1000 genomes]
rs57068527	1.00[AMR][1000 genomes]
rs7112028	1.00[AMR][1000 genomes]
rs7114012	1.00[AMR][1000 genomes]
rs7119836	1.00[AMR][1000 genomes]
rs7127853	1.00[AMR][1000 genomes]
rs73577815	1.00[AMR][1000 genomes]
rs73577817	1.00[AMR][1000 genomes]
rs73577818	1.00[AMR][1000 genomes]
rs73577836	1.00[AMR][1000 genomes]
rs73577844	1.00[AMR][1000 genomes]
rs73577845	1.00[AMR][1000 genomes]
rs73577849	1.00[AMR][1000 genomes]
rs73577861	1.00[AMR][1000 genomes]
rs73577866	1.00[AMR][1000 genomes]
rs73577873	1.00[AMR][1000 genomes]
rs73577877	1.00[AMR][1000 genomes]
rs73582003	1.00[AMR][1000 genomes]
rs73582018	1.00[AMR][1000 genomes]
rs73593086	1.00[AMR][1000 genomes]
rs73595173	1.00[AMR][1000 genomes]
rs73595175	1.00[AMR][1000 genomes]
rs7937545	1.00[AMR][1000 genomes]
rs7939800	1.00[AMR][1000 genomes]
rs7940270	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7949718	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv18891	chr11:101888827-101894040	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101886000-101894800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:101888200-101891200	Weak transcription	Colon Smooth Muscle	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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