Variant report

Variant	rs17097416
Chromosome Location	chr11:102010569-102010570
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:101980579..101982945-chr11:102007764..102010704,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137693	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12281951	1.00[AMR][1000 genomes]
rs12286551	1.00[AMR][1000 genomes]
rs17097419	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17097421	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17878891	1.00[AMR][1000 genomes]
rs17883028	1.00[AMR][1000 genomes]
rs17884964	1.00[AMR][1000 genomes]
rs17887192	1.00[AMR][1000 genomes]
rs1981420	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57068527	1.00[AMR][1000 genomes]
rs7112028	1.00[AMR][1000 genomes]
rs7114012	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7119836	1.00[AMR][1000 genomes]
rs7127853	1.00[AMR][1000 genomes]
rs73577815	1.00[AMR][1000 genomes]
rs73577817	1.00[AMR][1000 genomes]
rs73577818	1.00[AMR][1000 genomes]
rs73577836	1.00[AMR][1000 genomes]
rs73577844	1.00[AMR][1000 genomes]
rs73577845	1.00[AMR][1000 genomes]
rs73577849	1.00[AMR][1000 genomes]
rs73577861	1.00[AMR][1000 genomes]
rs73577866	1.00[AMR][1000 genomes]
rs73577873	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582018	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73593086	1.00[AMR][1000 genomes]
rs73595173	1.00[AMR][1000 genomes]
rs73595175	1.00[AMR][1000 genomes]
rs7927171	1.00[AMR][1000 genomes]
rs7937545	1.00[AMR][1000 genomes]
rs7939800	1.00[AMR][1000 genomes]
rs7940270	1.00[AMR][1000 genomes]
rs7942413	1.00[AMR][1000 genomes]
rs7949718	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1052348	chr11:101987090-102255753	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv556141	chr11:101988061-102207851	Weak transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1050961	chr11:101993880-102253717	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv1051735	chr11:101993880-102255753	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
7	nsv530646	chr11:102000840-102238992	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101983600-102014800	Weak transcription	Pancreas	Pancrea
2	chr11:101989600-102015200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr11:101991600-102012400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:101991600-102015200	Weak transcription	Fetal Kidney	kidney
5	chr11:101991600-102015600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr11:101998600-102033000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:101998600-102034200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr11:101998800-102014400	Weak transcription	Liver	Liver
9	chr11:101998800-102014600	Weak transcription	Small Intestine	intestine
10	chr11:101998800-102014800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr11:101999000-102012600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:102000800-102034000	Weak transcription	Lung	lung
13	chr11:102004600-102015600	Weak transcription	Ovary	ovary
14	chr11:102005800-102033000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:102006200-102014600	Weak transcription	Fetal Stomach	stomach
16	chr11:102006400-102012000	Weak transcription	Psoas Muscle	Psoas
17	chr11:102006400-102015400	Weak transcription	Right Atrium	heart
18	chr11:102006400-102015600	Weak transcription	Right Ventricle	heart
19	chr11:102007600-102012000	Weak transcription	Fetal Muscle Leg	muscle
20	chr11:102008800-102012000	Enhancers	HepG2	liver
21	chr11:102008800-102012000	Enhancers	HMEC	breast
22	chr11:102009000-102010600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:102009000-102010600	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr11:102009000-102010600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr11:102009000-102011000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr11:102009200-102010600	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr11:102009200-102010600	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr11:102009200-102010600	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr11:102009200-102010600	Enhancers	HSMM	muscle
30	chr11:102009200-102013200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr11:102009200-102015200	Weak transcription	Fetal Intestine Small	intestine
32	chr11:102009200-102015600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr11:102009200-102015600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr11:102009400-102010600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr11:102009400-102011000	Enhancers	Fetal Lung	lung
36	chr11:102009600-102010800	Enhancers	Muscle Satellite Cultured Cells	--
37	chr11:102009600-102010800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:102009800-102010600	Enhancers	Fetal Intestine Large	intestine
39	chr11:102009800-102010800	Enhancers	Fetal Heart	heart
40	chr11:102010000-102010600	Enhancers	Stomach Mucosa	stomach
41	chr11:102010000-102010600	Flanking Active TSS	NH-A	brain
42	chr11:102010000-102010600	Flanking Active TSS	NHDF-Ad	bronchial
43	chr11:102010000-102010600	Flanking Active TSS	NHEK	skin
44	chr11:102010000-102010600	Flanking Active TSS	Osteobl	bone
45	chr11:102010000-102010800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr11:102010000-102010800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr11:102010000-102010800	Flanking Active TSS	NHLF	lung
48	chr11:102010000-102015600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr11:102010000-102015600	Weak transcription	HUVEC	blood vessel
50	chr11:102010200-102010600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links