Variant report

Variant	rs73577873
Chromosome Location	chr11:101997487-101997488
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12281951	1.00[AMR][1000 genomes]
rs12286551	1.00[AMR][1000 genomes]
rs17097416	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17097419	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17097421	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17884964	1.00[AMR][1000 genomes]
rs17887192	1.00[AMR][1000 genomes]
rs1981420	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57068527	1.00[AMR][1000 genomes]
rs7112028	1.00[AMR][1000 genomes]
rs7114012	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7119836	1.00[AMR][1000 genomes]
rs7127853	1.00[AMR][1000 genomes]
rs73577815	1.00[AMR][1000 genomes]
rs73577817	1.00[AMR][1000 genomes]
rs73577818	1.00[AMR][1000 genomes]
rs73577836	1.00[AMR][1000 genomes]
rs73577844	1.00[AMR][1000 genomes]
rs73577845	1.00[AMR][1000 genomes]
rs73577849	1.00[AMR][1000 genomes]
rs73577861	1.00[AMR][1000 genomes]
rs73577866	1.00[AMR][1000 genomes]
rs73577877	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582003	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73593086	1.00[AMR][1000 genomes]
rs73595173	1.00[AMR][1000 genomes]
rs73595175	1.00[AMR][1000 genomes]
rs7927171	1.00[AMR][1000 genomes]
rs7937545	1.00[AMR][1000 genomes]
rs7939800	1.00[AMR][1000 genomes]
rs7940270	1.00[AMR][1000 genomes]
rs7942413	1.00[AMR][1000 genomes]
rs7949718	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1052348	chr11:101987090-102255753	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv556141	chr11:101988061-102207851	Weak transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1050961	chr11:101993880-102253717	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv1051735	chr11:101993880-102255753	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101983400-101998200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:101983600-101998000	Weak transcription	Right Ventricle	heart
3	chr11:101983600-101998200	Weak transcription	Colonic Mucosa	Colon
4	chr11:101983600-102014800	Weak transcription	Pancreas	Pancrea
5	chr11:101985200-101998000	Weak transcription	Gastric	stomach
6	chr11:101985200-102009200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:101988800-102009000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:101988800-102009600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr11:101989600-102015200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr11:101991000-102009000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr11:101991000-102010000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr11:101991400-101998000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr11:101991600-102002200	Weak transcription	Colon Smooth Muscle	Colon
14	chr11:101991600-102006000	Weak transcription	NHLF	lung
15	chr11:101991600-102008800	Weak transcription	HSMMtube	muscle
16	chr11:101991600-102012400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr11:101991600-102015200	Weak transcription	Fetal Kidney	kidney
18	chr11:101991600-102015600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr11:101991800-102001000	Weak transcription	HSMM	muscle
20	chr11:101991800-102001400	Strong transcription	Fetal Stomach	stomach
21	chr11:101992000-101999600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:101992400-101997600	Weak transcription	Adipose Nuclei	Adipose
23	chr11:101992600-102003600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:101992800-101998800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:101992800-102008800	Weak transcription	NHDF-Ad	bronchial
26	chr11:101993000-101998200	Weak transcription	Ovary	ovary
27	chr11:101993200-101998000	Weak transcription	Psoas Muscle	Psoas
28	chr11:101993200-102000000	Weak transcription	Lung	lung
29	chr11:101993600-101998800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr11:101993600-102000000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr11:101993800-101998600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr11:101993800-101999000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
33	chr11:101995000-101998000	Strong transcription	Placenta	Placenta
34	chr11:101995000-101998800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:101995200-101999400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
36	chr11:101995200-101999800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr11:101995400-101997600	Strong transcription	A549	lung
38	chr11:101995400-101997600	Strong transcription	HMEC	breast
39	chr11:101995400-101997600	Strong transcription	Osteobl	bone
40	chr11:101995400-101998000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr11:101995400-101998600	Strong transcription	Fetal Muscle Trunk	muscle
42	chr11:101995400-101998600	Strong transcription	Placenta Amnion	Placenta Amnion
43	chr11:101995400-101999000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr11:101995400-101999000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr11:101995400-101999200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:101995400-101999800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr11:101995400-102002200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr11:101995600-101999000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr11:101995800-101998000	Weak transcription	Left Ventricle	heart
50	chr11:101995800-101999200	Strong transcription	Fetal Muscle Leg	muscle

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