Variant report

Variant	rs1825208
Chromosome Location	chr6:64590235-64590236
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PHF3-9	chr6:64589092-64590517	ucscGeneNc_uc010kai_1
2	lnc-PHF3-9	chr6:64589092-64590494	NONHSAT113359

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10455430	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1057530	0.83[ASN][1000 genomes]
rs10943975	0.83[ASN][1000 genomes]
rs12205302	0.83[ASN][1000 genomes]
rs12205984	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs170347	0.83[EUR][1000 genomes]
rs1889096	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs319920	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs319923	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs319924	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs319925	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs321491	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs321494	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs321495	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs368894	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs450855	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4562122	0.83[ASN][1000 genomes]
rs4710437	0.81[ASN][1000 genomes]
rs4710440	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4710446	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs504776	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67875483	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6904818	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6911292	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6921058	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9359643	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024367	chr6:64453493-64615908	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1025270	chr6:64574202-64608983	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1020226	chr6:64582008-64793525	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538271	chr6:64582008-64793525	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv603376	chr6:64589465-64771342	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64590200-64591200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:64590200-64591400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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