Variant report

Variant	rs450855
Chromosome Location	chr6:64570743-64570744
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64570354..64572427-chr6:64574035..64576622,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10455430	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10485358	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1057530	0.88[ASN][1000 genomes]
rs10755432	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10943975	0.88[ASN][1000 genomes]
rs12190601	0.84[ASN][1000 genomes]
rs12205302	0.86[ASN][1000 genomes]
rs12205984	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1575054	0.82[JPT][hapmap]
rs170347	0.89[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1825208	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1889096	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs319920	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs319923	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs319924	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs319925	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs321491	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs321494	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs321495	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs368894	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4562122	0.88[ASN][1000 genomes]
rs4710437	0.85[ASN][1000 genomes]
rs4710440	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4710446	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs504776	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62412950	0.80[ASN][1000 genomes]
rs67875483	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6904818	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6911292	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6921058	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6921180	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs6932538	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs9359643	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024367	chr6:64453493-64615908	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64566200-64571600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:64569800-64574000	Weak transcription	Fetal Heart	heart

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