Variant report

Variant	rs6921058
Chromosome Location	chr6:64524151-64524152
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10455430	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10485358	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.95[MEX][hapmap];0.85[YRI][hapmap];0.80[ASN][1000 genomes]
rs1057530	0.88[ASN][1000 genomes]
rs10755432	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs10943975	0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12190601	0.84[ASN][1000 genomes]
rs12198142	0.86[ASN][1000 genomes]
rs12205302	0.86[ASN][1000 genomes]
rs12205984	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1575054	0.90[JPT][hapmap];0.95[YRI][hapmap]
rs170347	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1825208	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1889096	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs319920	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs319923	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs319924	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs319925	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs321491	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs321494	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs321495	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs368894	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs450855	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4562122	0.88[ASN][1000 genomes]
rs4710437	0.85[ASN][1000 genomes]
rs4710440	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4710446	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs504776	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62412950	0.80[ASN][1000 genomes]
rs67875483	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6904818	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6911292	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6921180	1.00[CHB][hapmap];0.98[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];0.95[YRI][hapmap];0.80[ASN][1000 genomes]
rs6932538	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];0.95[YRI][hapmap];0.80[ASN][1000 genomes]
rs7767473	0.90[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap]
rs9359643	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830674	chr6:64355412-64535801	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1024367	chr6:64453493-64615908	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1798215	chr6:64487748-64544220	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64519200-64531400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:64519400-64526000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr6:64519600-64525800	Weak transcription	HSMMtube	muscle
4	chr6:64523000-64524800	Enhancers	Fetal Brain Male	brain
5	chr6:64523600-64524800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:64524000-64527000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:64524000-64527200	Weak transcription	Adipose Nuclei	Adipose

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