Variant report

Variant	rs504776
Chromosome Location	chr6:64568205-64568206
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10455430	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1057530	0.88[ASN][1000 genomes]
rs10943975	0.88[ASN][1000 genomes]
rs12190601	0.85[ASN][1000 genomes]
rs12198142	0.80[ASN][1000 genomes]
rs12205302	0.86[ASN][1000 genomes]
rs12205984	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs170347	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1825208	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1889096	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs319920	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs319923	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs319924	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs319925	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs321491	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs321494	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs321495	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs368894	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs450855	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4562122	0.88[ASN][1000 genomes]
rs4710437	0.86[ASN][1000 genomes]
rs4710440	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4710446	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62412950	0.81[ASN][1000 genomes]
rs67875483	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6904818	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6911292	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921058	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9359643	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024367	chr6:64453493-64615908	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv966621	chr6:64557963-64568466	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64566200-64571600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:64566400-64568400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:64566400-64568600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr6:64567200-64569800	Enhancers	Fetal Heart	heart

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