Variant report

Variant	rs321495
Chromosome Location	chr6:64579550-64579551
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64577143..64578862-chr6:64579114..64581056,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10455430	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1057530	0.83[ASN][1000 genomes]
rs10943975	0.83[ASN][1000 genomes]
rs12205302	0.83[ASN][1000 genomes]
rs12205984	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs170347	0.83[EUR][1000 genomes]
rs1825208	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1889096	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs319920	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs319923	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs319924	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs319925	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs321491	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs321494	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs368894	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs450855	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4562122	0.83[ASN][1000 genomes]
rs4710437	0.81[ASN][1000 genomes]
rs4710440	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4710446	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs504776	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67875483	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6904818	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6911292	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6921058	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9359643	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024367	chr6:64453493-64615908	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1025270	chr6:64574202-64608983	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64575000-64579800	Weak transcription	Fetal Heart	heart
2	chr6:64579200-64580000	Enhancers	Pancreatic Islets	Pancreatic Islet

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