Variant report

Variant	rs1829612
Chromosome Location	chr2:212487433-212487434
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10177211	0.88[ASN][1000 genomes]
rs10177258	0.89[ASN][1000 genomes]
rs10469656	0.83[ASN][1000 genomes]
rs10497949	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12104775	0.89[ASN][1000 genomes]
rs12469375	0.88[ASN][1000 genomes]
rs12694246	0.82[EUR][1000 genomes]
rs1818752	0.81[AFR][1000 genomes]
rs1829613	0.96[ASN][1000 genomes]
rs1851175	0.98[EUR][1000 genomes]
rs1851176	0.98[EUR][1000 genomes]
rs1851177	0.84[ASN][1000 genomes]
rs1851190	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1851194	0.96[EUR][1000 genomes]
rs1851195	0.84[EUR][1000 genomes]
rs3863853	0.98[EUR][1000 genomes]
rs4605309	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7349376	0.96[ASN][1000 genomes]
rs7565192	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7593315	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7601664	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv584321	chr2:212446818-212511895	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv2754366	chr2:212470494-212541494	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212467400-212546800	Weak transcription	Aorta	Aorta
2	chr2:212470400-212489600	Weak transcription	Fetal Heart	heart
3	chr2:212483000-212487800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:212484200-212488400	Weak transcription	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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