Variant report

Variant	rs1851177
Chromosome Location	chr2:212491086-212491087
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10177211	0.94[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10177258	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10469656	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs10497949	0.89[CEU][hapmap];0.82[JPT][hapmap]
rs12104775	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12151575	0.80[AFR][1000 genomes]
rs12469375	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.92[LWK][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12616462	1.00[CEU][hapmap];0.80[CHB][hapmap];0.82[JPT][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1829612	0.84[ASN][1000 genomes]
rs1829613	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1851176	0.89[CEU][hapmap];0.82[CHB][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap]
rs1851178	0.81[JPT][hapmap]
rs1851190	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs1851194	0.89[CEU][hapmap];0.88[GIH][hapmap]
rs1851196	0.84[EUR][1000 genomes]
rs1851197	0.84[EUR][1000 genomes]
rs1851198	0.84[EUR][1000 genomes]
rs1851199	0.84[EUR][1000 genomes]
rs4605309	0.89[ASN][1000 genomes]
rs4672620	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.85[YRI][hapmap];0.92[EUR][1000 genomes]
rs4673625	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6706854	0.83[LWK][hapmap]
rs7349376	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7559679	0.89[CEU][hapmap]
rs7571215	0.94[JPT][hapmap]
rs7580963	0.84[EUR][1000 genomes]
rs7593315	0.86[ASN][1000 genomes]
rs7601664	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9288436	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv584321	chr2:212446818-212511895	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv2754366	chr2:212470494-212541494	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212467400-212546800	Weak transcription	Aorta	Aorta
2	chr2:212488400-212502800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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