Variant report

Variant	rs10177211
Chromosome Location	chr2:212475771-212475772
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10177258	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10203022	0.84[AMR][1000 genomes]
rs10210942	0.87[EUR][1000 genomes]
rs10469656	0.82[CHB][hapmap];0.83[EUR][1000 genomes]
rs10932387	0.86[AMR][1000 genomes]
rs10932388	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12104775	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12465773	0.87[EUR][1000 genomes]
rs12469375	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12616462	0.84[EUR][1000 genomes]
rs12694246	0.82[ASN][1000 genomes]
rs1818751	0.83[YRI][hapmap]
rs1829610	0.90[YRI][hapmap]
rs1829611	0.87[EUR][1000 genomes]
rs1829612	0.88[ASN][1000 genomes]
rs1829613	0.89[ASN][1000 genomes]
rs1851177	0.94[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1851178	0.90[EUR][1000 genomes]
rs1851190	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1851196	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1851197	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1851198	1.00[EUR][1000 genomes]
rs1851199	1.00[EUR][1000 genomes]
rs1972143	0.87[EUR][1000 genomes]
rs4605309	0.81[ASN][1000 genomes]
rs7349376	0.89[ASN][1000 genomes]
rs7559679	0.89[CEU][hapmap];0.92[EUR][1000 genomes]
rs7561282	0.82[YRI][hapmap]
rs7571215	0.90[CEU][hapmap];0.89[JPT][hapmap];0.86[YRI][hapmap]
rs7580963	1.00[EUR][1000 genomes]
rs7593315	0.92[ASN][1000 genomes]
rs7601664	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7602185	0.87[EUR][1000 genomes]
rs9288434	0.87[EUR][1000 genomes]
rs9288435	0.87[EUR][1000 genomes]
rs9288436	0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv584321	chr2:212446818-212511895	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv2754366	chr2:212470494-212541494	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
3	nsv961928	chr2:212475645-212476827	Enhancers Flanking Active TSS Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212467200-212480000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:212467400-212546800	Weak transcription	Aorta	Aorta
3	chr2:212470400-212489600	Weak transcription	Fetal Heart	heart
4	chr2:212473600-212476200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr2:212474600-212476000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:212475200-212476400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr2:212475400-212475800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr2:212475600-212475800	Enhancers	HepG2	liver
9	chr2:212475600-212477400	Flanking Active TSS	Dnd41	blood

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