Variant report

Variant	rs12469375
Chromosome Location	chr2:212492708-212492709
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10177211	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10177258	0.84[ASN][1000 genomes]
rs10469656	0.83[ASW][hapmap];1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10497949	0.89[CEU][hapmap];0.83[CHB][hapmap];0.83[ASN][1000 genomes]
rs10804200	0.83[EUR][1000 genomes]
rs12104775	0.84[ASN][1000 genomes]
rs12616462	1.00[CEU][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1829612	0.88[ASN][1000 genomes]
rs1829613	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1851176	0.89[CEU][hapmap]
rs1851177	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.92[LWK][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1851178	0.83[EUR][1000 genomes]
rs1851190	0.89[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1851194	0.89[CEU][hapmap]
rs3863853	0.83[ASN][1000 genomes]
rs4605309	0.98[ASN][1000 genomes]
rs4672620	1.00[CEU][hapmap];0.86[YRI][hapmap];0.98[EUR][1000 genomes]
rs4673625	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7349376	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7559679	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs7571215	0.88[JPT][hapmap]
rs7593315	0.88[ASN][1000 genomes]
rs7601664	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv584321	chr2:212446818-212511895	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv2754366	chr2:212470494-212541494	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212467400-212546800	Weak transcription	Aorta	Aorta
2	chr2:212488400-212502800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:212492000-212492800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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