Variant report

Variant	rs1851194
Chromosome Location	chr2:212498038-212498039
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10469656	0.89[CEU][hapmap];0.87[CHB][hapmap];0.88[GIH][hapmap]
rs10497949	1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[EUR][1000 genomes]
rs12469375	0.89[CEU][hapmap]
rs12616462	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs12694246	0.81[EUR][1000 genomes]
rs1818752	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs1829612	0.96[EUR][1000 genomes]
rs1851175	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1851176	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1851177	0.89[CEU][hapmap];0.88[GIH][hapmap]
rs1851190	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1851195	0.83[EUR][1000 genomes]
rs3863853	0.98[EUR][1000 genomes]
rs4605309	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4672620	0.89[CEU][hapmap];0.93[CHB][hapmap]
rs7559679	0.83[GIH][hapmap]
rs7565192	0.96[EUR][1000 genomes]
rs7593315	0.94[EUR][1000 genomes]
rs7601664	0.89[CEU][hapmap];0.94[GIH][hapmap];0.84[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv584321	chr2:212446818-212511895	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv2754366	chr2:212470494-212541494	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
3	nsv460070	chr2:212492764-212541377	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
4	nsv584322	chr2:212492764-212541377	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212467400-212546800	Weak transcription	Aorta	Aorta
2	chr2:212488400-212502800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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