Variant report

Variant	rs7559679
Chromosome Location	chr2:212471642-212471643
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10177211	0.89[CEU][hapmap];0.92[EUR][1000 genomes]
rs10177258	0.92[EUR][1000 genomes]
rs10203022	0.83[TSI][hapmap]
rs10469656	0.89[CEU][hapmap];0.93[JPT][hapmap];0.82[MEX][hapmap]
rs10497949	0.93[JPT][hapmap]
rs12104775	0.92[EUR][1000 genomes]
rs12469375	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs12616462	0.89[CEU][hapmap];0.93[JPT][hapmap]
rs1818752	0.88[CEU][hapmap]
rs1829611	0.80[MEX][hapmap];0.83[TSI][hapmap]
rs1851176	0.83[GIH][hapmap];0.93[JPT][hapmap]
rs1851177	0.89[CEU][hapmap]
rs1851178	0.89[CEU][hapmap];0.98[EUR][1000 genomes]
rs1851194	0.83[GIH][hapmap]
rs1851195	0.95[ASN][1000 genomes]
rs1851196	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.81[GIH][hapmap];0.93[JPT][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1851197	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1851198	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1851199	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1972143	0.90[MEX][hapmap];0.83[TSI][hapmap]
rs4672620	0.89[CEU][hapmap];0.93[JPT][hapmap];0.86[EUR][1000 genomes]
rs4673625	0.83[EUR][1000 genomes]
rs7349376	0.86[EUR][1000 genomes]
rs7556879	0.83[TSI][hapmap]
rs7571215	0.89[CEU][hapmap];0.81[JPT][hapmap]
rs7580963	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7601664	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs7602185	0.83[TSI][hapmap]
rs9288435	0.90[MEX][hapmap];0.83[TSI][hapmap]
rs9288436	0.92[CHB][hapmap];0.94[CHD][hapmap];0.81[GIH][hapmap];0.93[JPT][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460069	chr2:212415948-212471642	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv584320	chr2:212415948-212471642	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv584321	chr2:212446818-212511895	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2754366	chr2:212470494-212541494	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212456600-212473600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:212467200-212480000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:212467400-212546800	Weak transcription	Aorta	Aorta
4	chr2:212470400-212489600	Weak transcription	Fetal Heart	heart

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